Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03275

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,441,726	-		CCNA_03272	0.36	-0.7
3,441,739	+		CCNA_03272	0.37	-0.9
3,441,739	+		CCNA_03272	0.37	+1.2
3,441,747	-		CCNA_03272	0.37	+0.8
3,441,770	-		CCNA_03272	0.39	-2.7
3,441,774	+		CCNA_03272	0.39	-0.2
3,441,785	+		CCNA_03272	0.40	-1.0
3,441,805	-		CCNA_03272	0.42	+1.6
3,441,810	-		CCNA_03272	0.42	-0.2
3,441,832	+		CCNA_03272	0.43	+0.6
3,441,835	-		CCNA_03272	0.44	-0.5
3,441,840	-		CCNA_03272	0.44	-0.6
3,441,840	-		CCNA_03272	0.44	-0.2
3,441,840	-		CCNA_03272	0.44	-1.4
3,441,840	-		CCNA_03272	0.44	-0.0
3,441,840	-		CCNA_03272	0.44	-1.3
3,441,840	-		CCNA_03272	0.44	-0.2
3,441,850	+		CCNA_03272	0.45	+2.6
3,441,895	+		CCNA_03272	0.48	-0.5
3,441,912	+		CCNA_03272	0.49	-0.2
3,441,920	-		CCNA_03272	0.50	-0.8
3,441,922	-		CCNA_03272	0.50	+1.6
3,441,922	-		CCNA_03272	0.50	-0.7
3,441,932	-		CCNA_03272	0.50	+0.3
3,441,949	-		CCNA_03272	0.52	+2.1
3,441,954	-		CCNA_03272	0.52	-0.2
3,441,961	+		CCNA_03272	0.53	-1.4
3,442,024	+		CCNA_03272	0.57	-0.8
3,442,030	-		CCNA_03272	0.57	-1.9
3,442,044	-		CCNA_03272	0.58	-2.1
3,442,084	+		CCNA_03272	0.61	-0.2
3,442,084	+		CCNA_03272	0.61	-1.8
3,442,085	-		CCNA_03272	0.61	-0.1
3,442,089	+		CCNA_03272	0.62	-1.6
3,442,089	+		CCNA_03272	0.62	-1.3
3,442,089	+		CCNA_03272	0.62	-1.3
3,442,089	+		CCNA_03272	0.62	+3.6
3,442,089	+		CCNA_03272	0.62	+0.1
3,442,089	+		CCNA_03272	0.62	-1.2
3,442,089	+		CCNA_03272	0.62	-0.5
3,442,089	+		CCNA_03272	0.62	-0.7
3,442,089	+		CCNA_03272	0.62	-1.7
3,442,092	-		CCNA_03272	0.62	-1.4
3,442,092	-		CCNA_03272	0.62	+2.2
3,442,097	-		CCNA_03272	0.62	-0.2
3,442,097	-		CCNA_03272	0.62	-1.8
3,442,097	-		CCNA_03272	0.62	+0.3
3,442,097	-		CCNA_03272	0.62	-2.1
3,442,097	-		CCNA_03272	0.62	+0.1
3,442,097	-		CCNA_03272	0.62	+0.1
3,442,097	-		CCNA_03272	0.62	+1.6
3,442,097	-		CCNA_03272	0.62	-1.8
3,442,097	-		CCNA_03272	0.62	-0.3
3,442,097	-		CCNA_03272	0.62	-1.7
3,442,097	-		CCNA_03272	0.62	+0.2
3,442,098	+		CCNA_03272	0.62	-1.1
3,442,100	+		CCNA_03272	0.62	-1.2
3,442,106	-		CCNA_03272	0.63	-0.5
3,442,108	-		CCNA_03272	0.63	-0.2
3,442,108	-		CCNA_03272	0.63	+0.5
3,442,144	-		CCNA_03272	0.65	-1.2
3,442,169	+		CCNA_03272	0.67	-1.1
3,442,178	-		CCNA_03272	0.68	+0.6
3,442,185	-		CCNA_03272	0.68	-0.7
3,442,186	+		CCNA_03272	0.68	-0.6
3,442,218	+		CCNA_03272	0.71	-0.2
3,442,250	+		CCNA_03272	0.73	+1.1
3,442,250	+		CCNA_03272	0.73	+0.7
3,442,250	+		CCNA_03272	0.73	+0.2
3,442,255	+		CCNA_03272	0.73	+1.1
3,442,258	-		CCNA_03272	0.73	-0.9
3,442,270	-		CCNA_03272	0.74	+1.3
3,442,323	-		CCNA_03272	0.78	-1.6
3,442,372	+		CCNA_03272	0.81	+0.3
3,442,372	+		CCNA_03272	0.81	+0.1
3,442,372	+		CCNA_03272	0.81	+1.1
3,442,372	+		CCNA_03272	0.81	-1.3
3,442,372	+		CCNA_03272	0.81	-1.5
3,442,377	+		CCNA_03272	0.82	+1.6
3,442,377	+		CCNA_03272	0.82	-2.0
3,442,377	+		CCNA_03272	0.82	+0.6
3,442,380	-		CCNA_03272	0.82	-1.4
3,442,380	-		CCNA_03272	0.82	+0.1
3,442,380	-		CCNA_03272	0.82	-1.1
3,442,380	-		CCNA_03272	0.82	+0.6
3,442,383	-		CCNA_03272	0.82	+1.6
3,442,385	-		CCNA_03272	0.82	-0.7
3,442,385	-		CCNA_03272	0.82	-2.3
3,442,385	-		CCNA_03272	0.82	-0.5
3,442,404	+		CCNA_03272	0.84	-2.5
3,442,404	+		CCNA_03272	0.84	+0.3
3,442,404	+		CCNA_03272	0.84	-0.5
3,442,412	-		CCNA_03272	0.84	+1.1
3,442,412	-		CCNA_03272	0.84	-0.9
3,442,412	-		CCNA_03272	0.84	+0.3
3,442,448	+		CCNA_03272	0.87	-1.2
3,442,512	-				-2.4
3,442,522	-				-0.8
3,442,533	+				-0.7
3,442,541	-				-1.1
3,442,541	-				+1.1
3,442,549	+				+0.6
3,442,570	+				+0.6
3,442,570	+				-1.7
3,442,570	+				+0.6
3,442,578	-				-1.3
3,442,578	-				-0.2
3,442,609	+				-0.2
3,442,609	+				+1.4
3,442,609	+				+0.1
3,442,609	+				+0.6
3,442,617	-				-0.7
3,442,617	-				-2.1
3,442,617	-				+1.1
3,442,617	-				-1.9
3,442,617	-				-0.5
3,442,630	+				+0.5
3,442,630	-				+0.1
3,442,637	-				+0.9
3,442,637	-				-1.3
3,442,672	+		CCNA_03274	0.28	+1.1
3,442,675	-		CCNA_03274	0.31	-1.3
3,442,684	-		CCNA_03274	0.38	-0.5
3,442,721	-				+1.6
3,442,762	+		CCNA_03275	0.40	-1.7
3,442,779	+		CCNA_03275	0.52	-1.6
3,442,787	+				+0.1
3,442,790	+				+0.6
3,442,813	-				-2.8
3,442,838	+				-1.0
3,442,846	-				+0.6
3,442,867	-				-1.4
3,442,880	+				+0.3
3,442,887	+		CCNA_03276	0.11	+0.3
3,442,942	-		CCNA_03276	0.16	-0.4
3,442,947	+		CCNA_03276	0.17	-0.4
3,442,955	-		CCNA_03276	0.17	+0.3
3,443,000	+		CCNA_03276	0.22	-0.2
3,443,002	-		CCNA_03276	0.22	+1.6
3,443,008	-		CCNA_03276	0.23	-1.9
3,443,008	-		CCNA_03276	0.23	-1.5
3,443,023	+		CCNA_03276	0.24	+0.6
3,443,059	+		CCNA_03276	0.28	-0.8
3,443,114	+		CCNA_03276	0.34	-0.5
3,443,114	+		CCNA_03276	0.34	-1.9
3,443,122	-		CCNA_03276	0.34	+1.1
3,443,122	-		CCNA_03276	0.34	-0.8
3,443,166	+		CCNA_03276	0.39	+1.3
3,443,174	-		CCNA_03276	0.40	-0.1
3,443,179	-		CCNA_03276	0.40	+1.5
3,443,188	+		CCNA_03276	0.41	+1.3
3,443,193	+		CCNA_03276	0.42	+0.6
3,443,277	-		CCNA_03276	0.50	+1.7
3,443,279	+		CCNA_03276	0.50	-0.7
3,443,287	-		CCNA_03276	0.51	+0.6
3,443,287	-		CCNA_03276	0.51	-1.2
3,443,291	+		CCNA_03276	0.51	-0.2
3,443,299	-		CCNA_03276	0.52	-1.6
3,443,322	-		CCNA_03276	0.55	+0.8
3,443,340	-		CCNA_03276	0.56	-1.2
3,443,365	+		CCNA_03276	0.59	+1.6
3,443,399	+		CCNA_03276	0.62	+0.8
3,443,402	-		CCNA_03276	0.63	+0.3
3,443,407	-		CCNA_03276	0.63	+1.1
3,443,409	+		CCNA_03276	0.63	-0.2
3,443,450	-		CCNA_03276	0.67	-0.9
3,443,461	-		CCNA_03276	0.69	+1.9
3,443,461	-		CCNA_03276	0.69	+1.5
3,443,477	-		CCNA_03276	0.70	-0.7
3,443,478	-		CCNA_03276	0.70	-0.3
3,443,507	+		CCNA_03276	0.73	+1.6
3,443,527	-		CCNA_03276	0.75	+1.1
3,443,532	+		CCNA_03276	0.76	-1.4
3,443,535	-		CCNA_03276	0.76	+0.6
3,443,599	+		CCNA_03276	0.83	-1.3
3,443,599	+		CCNA_03276	0.83	+0.0
3,443,607	-		CCNA_03276	0.83	+0.3
3,443,622	-		CCNA_03276	0.85	-1.0
3,443,632	+		CCNA_03276	0.86	-0.7
3,443,632	+		CCNA_03276	0.86	-1.0
3,443,705	-				+0.7
3,443,712	-				+0.8
3,443,740	-				-0.4
3,443,756	+				+0.3
3,443,793	+				+0.6
3,443,802	+				+0.3
3,443,802	+				+0.8
3,443,810	-				-0.5
3,443,810	-				+0.3
3,443,810	-				-0.4
3,443,810	-				-1.1
3,443,810	-				+0.3
3,443,810	-				+0.6