Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03232

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,396,378	+		CCNA_03230	0.47	-0.9
3,396,429	+		CCNA_03230	0.50	+0.3
3,396,440	+		CCNA_03230	0.51	-0.8
3,396,442	-		CCNA_03230	0.51	-0.4
3,396,448	-		CCNA_03230	0.52	+0.1
3,396,514	-		CCNA_03230	0.56	+0.3
3,396,518	+		CCNA_03230	0.57	-0.1
3,396,565	-		CCNA_03230	0.60	-1.2
3,396,575	+		CCNA_03230	0.61	-1.2
3,396,575	+		CCNA_03230	0.61	+0.1
3,396,575	+		CCNA_03230	0.61	+1.1
3,396,583	-		CCNA_03230	0.61	-0.5
3,396,585	+		CCNA_03230	0.62	+2.7
3,396,593	-		CCNA_03230	0.62	-2.1
3,396,611	+				+1.7
3,396,627	-		CCNA_03230	0.65	+1.3
3,396,682	+		CCNA_03230	0.68	+0.8
3,396,701	+		CCNA_03230	0.70	-0.9
3,396,785	+		CCNA_03230	0.76	+1.7
3,396,792	+		CCNA_03230	0.76	+0.7
3,396,793	-		CCNA_03230	0.76	-1.2
3,396,802	+		CCNA_03230	0.77	+2.7
3,396,802	+		CCNA_03230	0.77	-0.9
3,396,826	+		CCNA_03230	0.79	-1.7
3,396,834	-		CCNA_03230	0.79	+1.3
3,396,856	-		CCNA_03230	0.81	+0.1
3,396,861	-		CCNA_03230	0.81	+1.7
3,396,904	+		CCNA_03230	0.84	-1.4
3,396,946	+		CCNA_03230	0.87	+0.1
3,396,946	+		CCNA_03230	0.87	+0.7
3,396,965	+		CCNA_03230	0.89	-1.2
3,396,973	-		CCNA_03230	0.89	-1.2
3,397,018	-				-0.5
3,397,020	-				-1.5
3,397,048	-				-2.0
3,397,048	-				-1.3
3,397,054	-				+0.1
3,397,054	-				-1.7
3,397,083	+				-1.3
3,397,094	+				+2.3
3,397,094	+				-1.1
3,397,102	-				-0.1
3,397,108	-				+0.7
3,397,108	-				+0.7
3,397,108	-				-1.1
3,397,123	-				-2.4
3,397,194	+		CCNA_03988	0.14	-0.0
3,397,202	-				-0.1
3,397,202	-				-0.4
3,397,210	+				+0.8
3,397,237	-				-1.7
3,397,257	+				+0.7
3,397,292	-				+0.7
3,397,318	+				-1.0
3,397,320	+				-2.4
3,397,321	+				+1.4
3,397,340	-				-0.3
3,397,349	-				-1.2
3,397,376	+				+1.7
3,397,385	-				-1.5
3,397,520	+		CCNA_03232	0.56	+0.7
3,397,528	+		CCNA_03232	0.59	-0.3
3,397,528	+		CCNA_03232	0.59	-0.7
3,397,536	-		CCNA_03232	0.62	-2.0
3,397,536	-		CCNA_03232	0.62	-1.9
3,397,536	-		CCNA_03232	0.62	+1.1
3,397,546	-		CCNA_03232	0.66	+0.2
3,397,546	-		CCNA_03232	0.66	-0.3
3,397,566	+		CCNA_03232	0.73	-2.8
3,397,574	-		CCNA_03232	0.76	-0.8
3,397,584	-		CCNA_03232	0.79	+0.2
3,397,630	+				-1.8
3,397,633	+				-2.0
3,397,634	+				+1.1
3,397,638	-				+2.7
3,397,643	-				-1.0
3,397,643	-				-0.3
3,397,686	+				+0.3
3,397,710	+				-0.1
3,397,718	-				-1.2
3,397,718	-				-0.8
3,397,758	+				+0.1
3,397,760	+				+1.1
3,397,766	-				-1.1
3,397,766	-				-0.8
3,397,775	-				-0.8
3,397,789	+		CCNA_03233	0.10	+1.1
3,397,798	-		CCNA_03233	0.11	-0.7
3,397,828	+		CCNA_03233	0.13	+0.1
3,397,888	+		CCNA_03233	0.17	+1.7
3,397,898	+		CCNA_03233	0.18	-1.9
3,397,906	-		CCNA_03233	0.19	+0.1
3,397,911	-		CCNA_03233	0.19	+0.8
3,397,949	+		CCNA_03233	0.22	-0.8
3,397,956	+		CCNA_03233	0.22	+1.1
3,397,956	+		CCNA_03233	0.22	-0.0
3,397,956	+		CCNA_03233	0.22	+1.1
3,397,964	-		CCNA_03233	0.23	-0.1
3,397,977	+		CCNA_03233	0.24	-2.4
3,398,028	+		CCNA_03233	0.27	-0.5
3,398,051	+		CCNA_03233	0.29	+0.1
3,398,051	+		CCNA_03233	0.29	+0.4
3,398,051	+		CCNA_03233	0.29	-0.3
3,398,059	-		CCNA_03233	0.30	-0.6
3,398,059	-		CCNA_03233	0.30	+0.7
3,398,059	-		CCNA_03233	0.30	+0.4
3,398,068	+		CCNA_03233	0.30	-1.1
3,398,094	-		CCNA_03233	0.32	-0.9
3,398,188	+		CCNA_03233	0.39	-0.1
3,398,188	+		CCNA_03233	0.39	-0.1
3,398,207	-		CCNA_03233	0.40	-1.0
3,398,262	-		CCNA_03233	0.44	+1.1
3,398,264	+		CCNA_03233	0.44	-0.9
3,398,348	-		CCNA_03233	0.50	+0.9
3,398,524	-		CCNA_03233	0.63	+0.1
3,398,594	+		CCNA_03233	0.68	+0.1
3,398,602	-		CCNA_03233	0.68	-0.3
3,398,602	-		CCNA_03233	0.68	-1.1
3,398,634	-		CCNA_03233	0.71	-1.9
3,398,634	-		CCNA_03233	0.71	-0.2