Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03209

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,370,701	+				-1.3
3,370,701	+				+2.7
3,370,709	-				-1.0
3,370,858	-		CCNA_03208	0.14	-1.6
3,370,908	+		CCNA_03208	0.20	+1.7
3,370,908	+		CCNA_03208	0.20	-0.4
3,370,953	+		CCNA_03208	0.25	+1.2
3,370,978	+		CCNA_03208	0.27	+0.6
3,370,978	+		CCNA_03208	0.27	-1.5
3,371,065	+		CCNA_03208	0.37	+2.3
3,371,065	+		CCNA_03208	0.37	+0.7
3,371,065	+		CCNA_03208	0.37	-0.3
3,371,065	+		CCNA_03208	0.37	+1.2
3,371,073	-		CCNA_03208	0.38	+0.7
3,371,073	-		CCNA_03208	0.38	-1.2
3,371,073	-				+2.7
3,371,117	-		CCNA_03208	0.42	-1.1
3,371,154	-		CCNA_03208	0.46	-1.6
3,371,154	-		CCNA_03208	0.46	-1.3
3,371,224	+		CCNA_03208	0.54	-0.8
3,371,245	-		CCNA_03208	0.56	+0.2
3,371,267	-		CCNA_03208	0.58	+1.2
3,371,293	-		CCNA_03208	0.61	+0.9
3,371,309	+		CCNA_03208	0.63	+1.2
3,371,309	+		CCNA_03208	0.63	+0.7
3,371,309	+		CCNA_03208	0.63	+0.2
3,371,311	+		CCNA_03208	0.63	-0.4
3,371,317	-		CCNA_03208	0.64	+0.9
3,371,317	-		CCNA_03208	0.64	+2.7
3,371,317	-		CCNA_03208	0.64	-1.4
3,371,317	-		CCNA_03208	0.64	+1.2
3,371,317	-		CCNA_03208	0.64	-0.7
3,371,317	-		CCNA_03208	0.64	+0.2
3,371,325	+		CCNA_03208	0.65	+0.5
3,371,329	-		CCNA_03208	0.65	-2.0
3,371,338	-		CCNA_03208	0.66	+0.4
3,371,351	+		CCNA_03208	0.67	-1.0
3,371,363	-		CCNA_03208	0.69	+0.2
3,371,388	-		CCNA_03208	0.71	+0.3
3,371,419	-		CCNA_03208	0.75	+0.2
3,371,527	-		CCNA_03208	0.86	-0.8
3,371,560	+		CCNA_03208	0.90	-0.6
3,371,560	+		CCNA_03208	0.90	-0.5
3,371,560	+		CCNA_03208	0.90	+1.2
3,371,561	-		CCNA_03208	0.90	-0.1
3,371,561	-		CCNA_03208	0.90	+1.2
3,371,567	+				+0.7
3,371,622	+				-1.5
3,371,629	+				+0.4
3,371,629	+				+1.0
3,371,637	-				-1.2
3,371,645	-				-1.3
3,371,668	+				-0.8
3,371,739	+				-0.3
3,371,747	-				+0.7
3,371,749	+				+0.9
3,371,749	+				+1.3
3,371,749	+				+0.7
3,371,757	-				-0.2
3,371,758	+				+0.6
3,371,766	-				-2.6
3,371,772	-				-0.3
3,371,795	+				-0.7
3,371,803	-				+2.0
3,371,803	-				+1.5
3,371,803	-				+1.9
3,371,805	+				-1.1
3,371,813	-		CCNA_03209	0.10	-0.1
3,371,813	-		CCNA_03209	0.10	-0.4
3,371,825	-		CCNA_03209	0.11	+1.2
3,371,869	+		CCNA_03209	0.15	-1.7
3,371,877	-		CCNA_03209	0.16	-0.4
3,371,907	+		CCNA_03209	0.18	-0.8
3,371,907	+		CCNA_03209	0.18	-0.3
3,371,918	+		CCNA_03209	0.19	-0.1
3,371,926	-		CCNA_03209	0.20	-0.1
3,371,930	+		CCNA_03209	0.20	-0.1
3,371,949	-		CCNA_03209	0.22	-1.3
3,371,953	-		CCNA_03209	0.22	-0.6
3,371,959	-		CCNA_03209	0.22	+0.7
3,371,988	+		CCNA_03209	0.25	+0.4
3,372,028	-		CCNA_03209	0.28	+0.4
3,372,074	-		CCNA_03209	0.32	-0.7
3,372,098	+		CCNA_03209	0.34	-1.5
3,372,100	-		CCNA_03209	0.34	+0.3
3,372,100	-		CCNA_03209	0.34	+0.2
3,372,121	+		CCNA_03209	0.36	-1.0
3,372,129	-		CCNA_03209	0.36	-1.1
3,372,131	+		CCNA_03209	0.36	-0.7
3,372,144	+		CCNA_03209	0.38	+1.4
3,372,145	+		CCNA_03209	0.38	-1.5
3,372,168	+		CCNA_03209	0.39	-0.1
3,372,178	-		CCNA_03209	0.40	+0.4
3,372,204	-		CCNA_03209	0.42	-0.1
3,372,239	-		CCNA_03209	0.45	+0.7
3,372,255	-		CCNA_03209	0.47	-1.8
3,372,260	-		CCNA_03209	0.47	-0.7
3,372,267	-		CCNA_03209	0.48	-0.6
3,372,282	+		CCNA_03209	0.49	+1.7
3,372,348	+		CCNA_03209	0.54	-0.3
3,372,390	-		CCNA_03209	0.58	+0.7
3,372,430	-		CCNA_03209	0.61	-0.8
3,372,460	-		CCNA_03209	0.63	+1.2
3,372,533	-		CCNA_03209	0.69	-1.0
3,372,537	+		CCNA_03209	0.70	+0.7
3,372,542	+		CCNA_03209	0.70	-0.7
3,372,563	+		CCNA_03209	0.72	+0.7
3,372,582	+		CCNA_03209	0.73	-2.2
3,372,587	+		CCNA_03209	0.74	-0.1
3,372,590	-		CCNA_03209	0.74	+1.2
3,372,590	-		CCNA_03209	0.74	-0.3
3,372,590	-		CCNA_03209	0.74	-0.8
3,372,590	-		CCNA_03209	0.74	-1.0
3,372,590	-		CCNA_03209	0.74	+0.2
3,372,590	-		CCNA_03209	0.74	-1.3
3,372,601	+		CCNA_03209	0.75	-0.6
3,372,639	+		CCNA_03209	0.78	-1.0
3,372,646	+		CCNA_03209	0.79	+0.7
3,372,663	-		CCNA_03209	0.80	+1.2
3,372,670	+		CCNA_03209	0.80	+0.2
3,372,708	-		CCNA_03209	0.84	+2.2
3,372,745	+		CCNA_03209	0.87	-0.4
3,372,785	+		CCNA_03209	0.90	-1.0
3,372,809	-				-0.3
3,372,809	-				-2.1
3,372,814	-				-0.4
3,372,816	-				-1.8
3,372,831	+				+0.0
3,372,905	+				+1.2
3,372,910	+				-2.5
3,372,910	+				+0.7
3,372,918	-				-0.3
3,373,001	+				-1.2
3,373,034	+				-1.8
3,373,034	+				-0.6
3,373,034	+				-0.3
3,373,037	+				-0.1
3,373,042	-				-1.3
3,373,043	-				-0.7
3,373,045	+				+0.1
3,373,055	+				+0.4
3,373,113	-				+1.2
3,373,118	+		CCNA_03210	0.10	+0.0
3,373,120	-		CCNA_03210	0.11	+1.2
3,373,125	-		CCNA_03210	0.11	-2.2
3,373,141	-		CCNA_03210	0.13	+0.2
3,373,153	-		CCNA_03210	0.14	+0.5
3,373,207	+		CCNA_03210	0.20	+0.5
3,373,214	+		CCNA_03210	0.20	-0.4
3,373,230	-		CCNA_03210	0.22	-1.1
3,373,258	-		CCNA_03210	0.25	+0.2
3,373,259	+		CCNA_03210	0.25	+0.3
3,373,269	+		CCNA_03210	0.26	-0.3
3,373,269	+		CCNA_03210	0.26	-1.0
3,373,303	+		CCNA_03210	0.30	+2.7
3,373,304	+		CCNA_03210	0.30	+0.6
3,373,311	+		CCNA_03210	0.31	+0.8
3,373,312	-		CCNA_03210	0.31	-1.4
3,373,312	-		CCNA_03210	0.31	-0.4
3,373,312	-		CCNA_03210	0.31	+0.7
3,373,325	+		CCNA_03210	0.32	+1.0
3,373,338	-		CCNA_03210	0.33	-1.1
3,373,360	+		CCNA_03210	0.36	-1.2
3,373,360	+		CCNA_03210	0.36	-0.7
3,373,368	-		CCNA_03210	0.37	-0.1
3,373,410	+		CCNA_03210	0.41	-0.3
3,373,418	-		CCNA_03210	0.42	-0.4
3,373,420	+		CCNA_03210	0.42	+0.1
3,373,422	+		CCNA_03210	0.42	-0.8
3,373,428	-		CCNA_03210	0.43	+2.7
3,373,484	-		CCNA_03210	0.49	+0.4
3,373,488	+		CCNA_03210	0.49	-0.3
3,373,558	+		CCNA_03210	0.56	+0.1
3,373,597	+		CCNA_03210	0.61	-0.1
3,373,605	-		CCNA_03210	0.61	+0.6
3,373,627	+		CCNA_03210	0.64	-0.9
3,373,629	+		CCNA_03210	0.64	+2.7
3,373,637	-		CCNA_03210	0.65	-2.3
3,373,684	+		CCNA_03210	0.70	+0.4
3,373,688	-		CCNA_03210	0.70	+0.4
3,373,692	-		CCNA_03210	0.71	+0.4
3,373,755	-		CCNA_03210	0.77	+1.7
3,373,810	-		CCNA_03210	0.83	-2.1
3,373,812	+		CCNA_03210	0.83	+0.4
3,373,867	+		CCNA_03210	0.89	-0.0