Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03185

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,344,934	+		CCNA_03184	0.52	-0.6
3,344,942	-		CCNA_03184	0.52	-2.2
3,344,946	-		CCNA_03184	0.53	-0.6
3,345,016	-		CCNA_03184	0.57	-0.2
3,345,024	-		CCNA_03184	0.57	-1.1
3,345,030	+		CCNA_03184	0.58	-0.6
3,345,038	-		CCNA_03184	0.58	+0.2
3,345,066	-		CCNA_03184	0.60	-1.7
3,345,066	-		CCNA_03184	0.60	-0.9
3,345,179	+		CCNA_03184	0.66	-1.1
3,345,180	+		CCNA_03184	0.66	-0.6
3,345,188	-		CCNA_03184	0.67	-1.6
3,345,188	-		CCNA_03184	0.67	-1.2
3,345,220	+		CCNA_03184	0.69	-1.1
3,345,229	+		CCNA_03184	0.69	+0.8
3,345,237	-		CCNA_03184	0.70	+0.2
3,345,258	+		CCNA_03184	0.71	+1.8
3,345,266	-		CCNA_03184	0.72	+1.2
3,345,312	+		CCNA_03184	0.74	+0.8
3,345,317	+		CCNA_03184	0.75	+0.8
3,345,325	-		CCNA_03184	0.75	+1.7
3,345,325	-		CCNA_03184	0.75	+0.1
3,345,325	-		CCNA_03184	0.75	-1.2
3,345,341	+		CCNA_03184	0.76	-0.2
3,345,341	+		CCNA_03184	0.76	+0.2
3,345,349	-		CCNA_03184	0.76	+0.6
3,345,349	-		CCNA_03184	0.76	+1.6
3,345,367	+		CCNA_03184	0.77	+0.8
3,345,392	-		CCNA_03184	0.79	+0.6
3,345,431	-		CCNA_03184	0.81	-2.1
3,345,435	+		CCNA_03184	0.81	+1.8
3,345,472	-		CCNA_03184	0.84	-2.3
3,345,479	+		CCNA_03184	0.84	+0.9
3,345,566	+		CCNA_03184	0.89	+1.2
3,345,569	-		CCNA_03184	0.89	-1.2
3,345,631	-				-1.3
3,345,648	+				-0.2
3,345,656	-				-0.6
3,345,666	-				-1.2
3,345,696	-				+0.2
3,345,707	+				-0.5
3,345,744	+				+0.0
3,345,746	-				-0.8
3,345,749	+				+0.0
3,345,757	-				+0.8
3,345,813	+				-0.9
3,345,906	+				-0.5
3,345,924	+		CCNA_03185	0.11	-0.8
3,345,954	+		CCNA_03185	0.16	+0.2
3,345,984	+		CCNA_03185	0.21	+0.1
3,346,015	-		CCNA_03185	0.26	-1.6
3,346,113	-		CCNA_03185	0.41	-0.3
3,346,130	+		CCNA_03185	0.44	+0.6
3,346,133	+		CCNA_03185	0.45	-0.6
3,346,142	+		CCNA_03185	0.46	-0.5
3,346,146	+		CCNA_03185	0.47	+1.2
3,346,148	+		CCNA_03185	0.47	+0.8
3,346,154	-		CCNA_03185	0.48	-0.1
3,346,154	-		CCNA_03185	0.48	-0.5
3,346,158	+		CCNA_03185	0.49	-0.9
3,346,204	-		CCNA_03185	0.56	-1.5
3,346,215	-		CCNA_03185	0.58	-0.2
3,346,250	-		CCNA_03185	0.63	-1.5
3,346,279	+		CCNA_03185	0.68	-0.9
3,346,289	+		CCNA_03185	0.70	-1.1
3,346,312	+		CCNA_03185	0.73	+0.5
3,346,320	-		CCNA_03185	0.74	+0.0
3,346,335	+		CCNA_03185	0.77	-1.3
3,346,370	-		CCNA_03185	0.82	-0.2
3,346,376	-		CCNA_03185	0.83	-0.5
3,346,422	-				+0.8
3,346,429	+				-0.8
3,346,437	-				+0.8
3,346,439	-				+0.2
3,346,446	+				+0.2
3,346,446	+				+2.8
3,346,450	-				-0.5
3,346,454	-				+0.2
3,346,454	-				-0.9
3,346,491	+				+0.0
3,346,493	-				+1.5
3,346,498	+				+0.2
3,346,498	+				+1.2
3,346,529	-				+3.0
3,346,562	+				+0.4
3,346,562	+				+0.7
3,346,562	+				-1.9
3,346,562	+				+0.2
3,346,570	-				+1.8
3,346,570	-				+2.8
3,346,575	-				+0.2
3,346,576	-				+0.3
3,346,584	+				+0.5
3,346,585	+				+0.8
3,346,593	-				-0.9
3,346,627	-		CCNA_03186	0.13	-0.7
3,346,627	-		CCNA_03186	0.13	-1.2
3,346,632	+		CCNA_03186	0.13	+0.0
3,346,632	+		CCNA_03186	0.13	+0.1
3,346,632	+		CCNA_03186	0.13	-0.6
3,346,640	-		CCNA_03186	0.14	-0.6
3,346,640	-		CCNA_03186	0.14	-0.8
3,346,653	+				+2.8
3,346,683	-		CCNA_03186	0.18	-1.2
3,346,696	-		CCNA_03186	0.19	-2.2
3,346,716	+		CCNA_03186	0.21	+3.3
3,346,724	-		CCNA_03186	0.21	-1.1
3,346,724	-		CCNA_03186	0.21	+0.2
3,346,746	+		CCNA_03186	0.23	+0.0
3,346,747	-		CCNA_03186	0.23	+0.7
3,346,752	-		CCNA_03186	0.24	-1.0
3,346,754	+		CCNA_03186	0.24	-0.2
3,346,788	-		CCNA_03186	0.27	-0.6
3,346,802	+		CCNA_03186	0.28	-1.0
3,346,802	+		CCNA_03186	0.28	+1.2
3,346,802	+		CCNA_03186	0.28	+0.5
3,346,802	+		CCNA_03186	0.28	+0.2
3,346,802	+		CCNA_03186	0.28	-0.8
3,346,810	-		CCNA_03186	0.29	+1.2
3,346,810	-		CCNA_03186	0.29	-2.6
3,346,810	-		CCNA_03186	0.29	-0.9
3,346,810	-		CCNA_03186	0.29	+1.2
3,346,810	-		CCNA_03186	0.29	+0.1
3,346,810	-		CCNA_03186	0.29	+1.8
3,346,830	-		CCNA_03186	0.31	+1.8
3,346,852	+		CCNA_03186	0.33	-0.2
3,346,855	-		CCNA_03186	0.33	+0.5
3,346,894	+		CCNA_03186	0.36	+0.8
3,346,897	-		CCNA_03186	0.37	+0.0
3,346,911	-		CCNA_03186	0.38	-0.2
3,346,920	-		CCNA_03186	0.39	-1.4
3,346,949	+		CCNA_03186	0.41	+0.8
3,346,950	+		CCNA_03186	0.41	+0.2
3,346,957	-		CCNA_03186	0.42	-0.3
3,346,957	-		CCNA_03186	0.42	+1.5
3,346,964	-		CCNA_03186	0.43	+1.2
3,347,022	+		CCNA_03186	0.48	-0.2
3,347,024	-		CCNA_03186	0.48	-0.2
3,347,032	+		CCNA_03186	0.49	+3.8
3,347,102	-		CCNA_03186	0.55	+1.8
3,347,106	+		CCNA_03186	0.55	-0.4
3,347,114	-		CCNA_03186	0.56	-1.7
3,347,121	+		CCNA_03186	0.57	+2.8
3,347,129	+		CCNA_03186	0.58	+0.2
3,347,220	-		CCNA_03186	0.66	+1.2
3,347,226	+		CCNA_03186	0.66	+2.1
3,347,234	-		CCNA_03186	0.67	-0.8
3,347,239	-		CCNA_03186	0.67	-1.9
3,347,239	-		CCNA_03186	0.67	-1.9
3,347,239	-		CCNA_03186	0.67	+1.8
3,347,239	-		CCNA_03186	0.67	+0.5
3,347,239	-		CCNA_03186	0.67	-1.0
3,347,246	-		CCNA_03186	0.68	+0.2
3,347,268	-		CCNA_03186	0.70	+0.0
3,347,303	+		CCNA_03186	0.73	-0.8
3,347,309	+		CCNA_03186	0.74	+0.0
3,347,311	-		CCNA_03186	0.74	-1.9
3,347,336	-		CCNA_03186	0.76	+0.4
3,347,352	-		CCNA_03186	0.78	+0.5
3,347,353	-		CCNA_03186	0.78	-3.2
3,347,435	+		CCNA_03186	0.85	-1.5
3,347,435	+		CCNA_03186	0.85	-0.6
3,347,458	-		CCNA_03186	0.87	-0.4