Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03157

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,311,450	+		CCNA_03155	0.24	+2.1
3,311,457	+		CCNA_03155	0.25	+1.0
3,311,457	-		CCNA_03155	0.25	+0.2
3,311,482	+		CCNA_03155	0.29	+1.3
3,311,489	+		CCNA_03155	0.30	+1.1
3,311,512	+		CCNA_03155	0.34	+2.8
3,311,512	-		CCNA_03155	0.34	+0.2
3,311,512	-		CCNA_03155	0.34	-0.5
3,311,519	-		CCNA_03155	0.35	+0.8
3,311,520	-		CCNA_03155	0.35	+0.0
3,311,520	-		CCNA_03155	0.35	+2.2
3,311,522	+		CCNA_03155	0.36	+1.6
3,311,554	-		CCNA_03155	0.41	+2.8
3,311,568	+		CCNA_03155	0.43	+1.7
3,311,571	+		CCNA_03155	0.43	+1.0
3,311,618	+		CCNA_03155	0.51	+1.7
3,311,618	+		CCNA_03155	0.51	+0.7
3,311,628	+		CCNA_03155	0.52	+1.1
3,311,633	+		CCNA_03155	0.53	+1.1
3,311,743	-		CCNA_03155	0.71	-0.1
3,311,760	+		CCNA_03155	0.73	+2.0
3,311,760	+		CCNA_03155	0.73	+1.1
3,311,760	+		CCNA_03155	0.73	+2.2
3,311,760	+		CCNA_03155	0.73	+1.2
3,311,760	+		CCNA_03155	0.73	+1.8
3,311,760	+		CCNA_03155	0.73	+2.0
3,311,760	+		CCNA_03155	0.73	+1.9
3,311,768	-		CCNA_03155	0.75	+0.8
3,311,768	-		CCNA_03155	0.75	-0.9
3,311,768	-		CCNA_03155	0.75	+1.2
3,311,775	+		CCNA_03155	0.76	+0.4
3,311,804	-		CCNA_03155	0.80	+2.8
3,311,817	+		CCNA_03155	0.82	+0.9
3,311,817	+		CCNA_03155	0.82	+1.5
3,311,875	+				+1.5
3,311,879	+				+0.9
3,311,883	-				+2.1
3,311,887	-				-1.8
3,311,887	-				-0.2
3,311,908	-				+0.8
3,311,929	-				+0.5
3,311,959	-				-0.9
3,311,964	-				+2.2
3,312,006	+		CCNA_03156	0.13	+1.1
3,312,006	+		CCNA_03156	0.13	+1.1
3,312,013	-		CCNA_03156	0.15	+1.0
3,312,014	-		CCNA_03156	0.15	+0.5
3,312,036	+		CCNA_03156	0.19	+0.9
3,312,126	-		CCNA_03156	0.36	+0.0
3,312,159	-		CCNA_03156	0.43	-0.8
3,312,183	-				+2.8
3,312,186	+		CCNA_03156	0.48	+2.2
3,312,225	+		CCNA_03156	0.56	+2.1
3,312,297	+		CCNA_03156	0.70	+2.1
3,312,297	+		CCNA_03156	0.70	+1.6
3,312,308	+		CCNA_03156	0.72	+2.2
3,312,310	+		CCNA_03156	0.72	+1.6
3,312,318	-		CCNA_03156	0.74	-0.5
3,312,318	-		CCNA_03156	0.74	+0.2
3,312,376	+		CCNA_03156	0.85	+3.8
3,312,381	+		CCNA_03156	0.86	+1.0
3,312,419	-				-2.4
3,312,431	-				+0.5
3,312,439	-				-0.2
3,312,458	+				-0.1
3,312,459	+				+1.0
3,312,466	+				+1.6
3,312,467	-				-0.8
3,312,502	+				+1.8
3,312,507	+				+1.6
3,312,515	-				+1.8
3,312,542	+		CCNA_03157	0.10	+1.3
3,312,550	-		CCNA_03157	0.11	+1.2
3,312,560	-		CCNA_03157	0.12	+0.2
3,312,583	+		CCNA_03157	0.15	+0.8
3,312,623	+		CCNA_03157	0.20	+0.7
3,312,623	+		CCNA_03157	0.20	+0.1
3,312,623	+		CCNA_03157	0.20	+2.0
3,312,623	+		CCNA_03157	0.20	+0.4
3,312,623	+		CCNA_03157	0.20	+1.8
3,312,623	+		CCNA_03157	0.20	+0.8
3,312,623	+		CCNA_03157	0.20	+0.2
3,312,626	-		CCNA_03157	0.20	+1.2
3,312,631	-		CCNA_03157	0.20	-0.6
3,312,631	-		CCNA_03157	0.20	-0.2
3,312,631	-		CCNA_03157	0.20	+0.5
3,312,631	-		CCNA_03157	0.20	+0.2
3,312,631	-		CCNA_03157	0.20	-0.5
3,312,631	-		CCNA_03157	0.20	-1.3
3,312,631	-		CCNA_03157	0.20	-0.9
3,312,666	-		CCNA_03157	0.24	-0.6
3,312,668	-		CCNA_03157	0.25	-0.2
3,312,714	+		CCNA_03157	0.30	+0.3
3,312,714	+		CCNA_03157	0.30	+1.4
3,312,714	+		CCNA_03157	0.30	+3.1
3,312,714	+		CCNA_03157	0.30	+1.8
3,312,714	+		CCNA_03157	0.30	+1.0
3,312,722	-		CCNA_03157	0.31	+0.8
3,312,722	-		CCNA_03157	0.31	+0.0
3,312,722	-		CCNA_03157	0.31	+0.2
3,312,722	-		CCNA_03157	0.31	-1.0
3,312,722	-		CCNA_03157	0.31	+1.8
3,312,722	-		CCNA_03157	0.31	-1.1
3,312,722	-		CCNA_03157	0.31	+0.2
3,312,722	-		CCNA_03157	0.31	-0.3
3,312,722	-		CCNA_03157	0.31	-0.9
3,312,760	+		CCNA_03157	0.35	+2.0
3,312,777	+		CCNA_03157	0.37	+0.9
3,312,804	+		CCNA_03157	0.40	+0.7
3,312,818	+		CCNA_03157	0.42	+0.5
3,312,840	+		CCNA_03157	0.44	+0.8
3,312,840	+		CCNA_03157	0.44	+0.5
3,312,848	-		CCNA_03157	0.45	+0.5
3,312,881	+		CCNA_03157	0.49	+1.0
3,312,881	+		CCNA_03157	0.49	+2.1
3,312,948	-		CCNA_03157	0.56	+0.5
3,312,963	+		CCNA_03157	0.58	+1.9
3,312,970	+		CCNA_03157	0.59	+0.3
3,312,970	+		CCNA_03157	0.59	+1.2
3,312,970	+		CCNA_03157	0.59	+1.9
3,312,970	+		CCNA_03157	0.59	+1.7
3,312,978	-		CCNA_03157	0.60	-2.0
3,312,978	-		CCNA_03157	0.60	-0.2
3,312,978	-		CCNA_03157	0.60	-0.9
3,312,993	+		CCNA_03157	0.61	+1.3
3,313,090	+		CCNA_03157	0.72	+1.8
3,313,108	+		CCNA_03157	0.74	+3.1
3,313,111	-		CCNA_03157	0.75	-1.3
3,313,126	-		CCNA_03157	0.76	-0.1
3,313,153	+		CCNA_03157	0.79	+2.5
3,313,153	+		CCNA_03157	0.79	+2.0
3,313,153	+		CCNA_03157	0.79	+1.7
3,313,161	-		CCNA_03157	0.80	+0.5
3,313,171	-		CCNA_03157	0.81	-1.0
3,313,173	+		CCNA_03157	0.82	+2.3
3,313,173	+		CCNA_03157	0.82	+2.5
3,313,181	-		CCNA_03157	0.83	-0.5
3,313,184	+		CCNA_03157	0.83	+2.4
3,313,252	-				+0.5
3,313,293	+				+2.7
3,313,309	-				-0.5
3,313,344	+				+3.0
3,313,352	-				-1.9
3,313,363	+				+2.1
3,313,377	+				+2.9
3,313,411	-				+0.4
3,313,474	-				-1.8
3,313,486	-				-0.3
3,313,514	+				+2.1
3,313,546	+				+1.8
3,313,550	+				+1.9
3,313,550	+				+2.1
3,313,564	+				+1.6
3,313,577	-				-0.5
3,313,587	+				+1.0
3,313,602	+				+1.8
3,313,653	+		CCNA_03158	0.15	+2.4
3,313,656	-		CCNA_03158	0.15	-1.3
3,313,695	-		CCNA_03158	0.19	-0.6
3,313,705	+		CCNA_03158	0.20	+1.8
3,313,705	+		CCNA_03158	0.20	+1.9
3,313,705	+		CCNA_03158	0.20	+1.8
3,313,705	+		CCNA_03158	0.20	+2.6
3,313,713	-		CCNA_03158	0.21	+1.2
3,313,713	-		CCNA_03158	0.21	+1.2
3,313,713	-		CCNA_03158	0.21	-0.6
3,313,723	-		CCNA_03158	0.22	+0.0
3,313,738	-		CCNA_03158	0.24	-0.2
3,313,759	-		CCNA_03158	0.26	-0.4
3,313,796	-		CCNA_03158	0.30	+0.7
3,313,866	+		CCNA_03158	0.37	+2.2
3,313,947	+		CCNA_03158	0.46	-1.6
3,313,947	+		CCNA_03158	0.46	+0.9
3,314,000	+		CCNA_03158	0.51	+0.6
3,314,005	+		CCNA_03158	0.52	+0.8
3,314,017	+		CCNA_03158	0.53	+1.0
3,314,017	+		CCNA_03158	0.53	+2.5
3,314,028	+		CCNA_03158	0.54	+1.2
3,314,036	-		CCNA_03158	0.55	+0.2
3,314,078	+		CCNA_03158	0.59	+4.1
3,314,083	+		CCNA_03158	0.60	+1.6
3,314,083	+		CCNA_03158	0.60	+1.5
3,314,124	-		CCNA_03158	0.64	-0.2
3,314,210	-		CCNA_03158	0.73	-2.0
3,314,221	+		CCNA_03158	0.74	+0.0
3,314,235	+		CCNA_03158	0.76	+0.9
3,314,235	+		CCNA_03158	0.76	+2.6
3,314,239	+		CCNA_03158	0.76	+1.0
3,314,243	-		CCNA_03158	0.77	-0.2
3,314,272	-		CCNA_03158	0.80	+1.8
3,314,288	+		CCNA_03158	0.81	+0.8
3,314,288	+		CCNA_03158	0.81	+1.4
3,314,293	+		CCNA_03158	0.82	+1.6
3,314,294	+		CCNA_03158	0.82	+2.3
3,314,294	+		CCNA_03158	0.82	+1.7
3,314,323	+		CCNA_03158	0.85	+4.0
3,314,330	+		CCNA_03158	0.86	+1.8
3,314,330	+		CCNA_03158	0.86	+1.6
3,314,330	+		CCNA_03158	0.86	+1.0