Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03075

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,223,893	-		CCNA_03073	0.48	-0.1
3,223,924	-		CCNA_03073	0.54	+0.0
3,223,932	+		CCNA_03073	0.55	-1.4
3,223,941	-		CCNA_03073	0.57	+0.8
3,223,977	-		CCNA_03073	0.64	+1.2
3,224,001	+		CCNA_03073	0.68	-1.7
3,224,009	-		CCNA_03073	0.70	-2.4
3,224,029	-		CCNA_03073	0.74	+1.4
3,224,055	+		CCNA_03073	0.79	-0.6
3,224,071	+		CCNA_03073	0.82	+0.2
3,224,074	+		CCNA_03073	0.82	+0.8
3,224,113	+		CCNA_03073	0.90	+1.8
3,224,121	-				+0.3
3,224,126	-				-1.7
3,224,131	+				-1.0
3,224,131	+				-0.7
3,224,146	+				+0.1
3,224,154	-				+1.8
3,224,163	-				-2.1
3,224,200	+				+1.8
3,224,283	-		CCNA_03074	0.16	-0.2
3,224,293	+		CCNA_03074	0.18	-0.6
3,224,301	-		CCNA_03074	0.19	-0.6
3,224,325	-		CCNA_03074	0.22	-0.9
3,224,341	+		CCNA_03074	0.24	+2.6
3,224,349	-		CCNA_03074	0.25	+1.2
3,224,362	+		CCNA_03074	0.27	+0.2
3,224,368	-		CCNA_03074	0.28	-0.5
3,224,415	-		CCNA_03074	0.34	+0.0
3,224,415	-		CCNA_03074	0.34	-1.4
3,224,438	-		CCNA_03074	0.38	-1.2
3,224,447	-		CCNA_03074	0.39	+1.8
3,224,494	-		CCNA_03074	0.45	+1.2
3,224,514	-		CCNA_03074	0.48	-0.2
3,224,543	+		CCNA_03074	0.52	+1.2
3,224,543	+		CCNA_03074	0.52	+0.5
3,224,543	+		CCNA_03074	0.52	-0.2
3,224,543	+		CCNA_03074	0.52	-0.6
3,224,543	+		CCNA_03074	0.52	-0.6
3,224,543	+		CCNA_03074	0.52	+0.0
3,224,543	+		CCNA_03074	0.52	-0.4
3,224,551	-				+2.8
3,224,551	-		CCNA_03074	0.53	-1.4
3,224,551	-		CCNA_03074	0.53	-2.5
3,224,593	-		CCNA_03074	0.59	-1.1
3,224,606	-		CCNA_03074	0.61	-1.3
3,224,641	-		CCNA_03074	0.66	-0.5
3,224,646	+		CCNA_03074	0.66	-0.4
3,224,646	+		CCNA_03074	0.66	+0.8
3,224,646	+		CCNA_03074	0.66	+0.5
3,224,654	-		CCNA_03074	0.67	+0.2
3,224,706	-		CCNA_03074	0.75	-1.1
3,224,715	+		CCNA_03074	0.76	+0.2
3,224,723	-		CCNA_03074	0.77	-1.6
3,224,754	+		CCNA_03074	0.81	-0.6
3,224,754	+		CCNA_03074	0.81	-1.8
3,224,762	-		CCNA_03074	0.82	-0.8
3,224,769	+		CCNA_03074	0.83	-0.9
3,224,775	+		CCNA_03074	0.84	-0.7
3,224,799	+		CCNA_03074	0.88	+0.7
3,224,809	+		CCNA_03074	0.89	-1.6
3,224,810	+		CCNA_03074	0.89	-1.9
3,224,818	-				+1.0
3,224,818	-				-0.6
3,224,818	-				-0.8
3,224,819	+				+0.2
3,224,876	-				+1.2
3,224,881	-				+0.8
3,224,901	+				+1.8
3,224,903	+				+0.8
3,224,903	+				-1.2
3,224,909	-				-0.2
3,224,972	+		CCNA_03075	0.16	-0.6
3,224,972	+		CCNA_03075	0.16	+0.8
3,225,071	+		CCNA_03075	0.34	-0.5
3,225,079	-		CCNA_03075	0.35	+1.2
3,225,084	-		CCNA_03075	0.36	-1.6
3,225,101	+		CCNA_03075	0.39	-0.8
3,225,101	+		CCNA_03075	0.39	+0.0
3,225,106	+		CCNA_03075	0.40	-2.0
3,225,138	-		CCNA_03075	0.46	+0.8
3,225,140	+		CCNA_03075	0.46	+0.8
3,225,143	-		CCNA_03075	0.47	-0.8
3,225,174	+		CCNA_03075	0.52	-0.5
3,225,178	+		CCNA_03075	0.53	-1.0
3,225,180	-		CCNA_03075	0.53	-1.5
3,225,206	+		CCNA_03075	0.58	-0.4
3,225,222	+		CCNA_03075	0.61	+1.2
3,225,235	-		CCNA_03075	0.63	-1.7
3,225,292	-		CCNA_03075	0.74	+0.5
3,225,306	-		CCNA_03075	0.76	+0.2
3,225,306	-		CCNA_03075	0.76	+0.9
3,225,306	-		CCNA_03075	0.76	+0.3
3,225,313	-		CCNA_03075	0.78	-0.4
3,225,320	+		CCNA_03075	0.79	+1.8
3,225,320	+		CCNA_03075	0.79	+0.8
3,225,375	+		CCNA_03075	0.89	-1.6
3,225,444	+				-1.1
3,225,454	+				+0.0
3,225,491	+				+2.8
3,225,496	+				+0.8
3,225,499	-				-1.4
3,225,499	-				+0.0
3,225,499	-				+1.2
3,225,514	+				-1.6
3,225,514	+				+0.8
3,225,514	+				+1.8
3,225,522	-				-1.1
3,225,522	-				+1.2
3,225,554	-				-1.8
3,225,583	+				-1.2
3,225,590	+				-0.8
3,225,590	+				-0.2
3,225,598	-				-2.0
3,225,598	-				+0.5
3,225,613	+				-1.1
3,225,613	+				+0.7
3,225,613	+				-0.4
3,225,657	-				+1.8
3,225,725	-				-1.8
3,225,727	+				-1.1
3,225,727	+				+1.0
3,225,727	+				+0.5
3,225,727	+				+0.1
3,225,735	-				+1.0
3,225,735	-				-0.2
3,225,735	-				-0.2
3,225,735	-				+0.8
3,225,762	-		CCNA_03076	0.10	+0.5
3,225,762	-		CCNA_03076	0.10	-1.1
3,225,784	+		CCNA_03076	0.11	-1.1
3,225,785	+		CCNA_03076	0.11	+0.8
3,225,785	+		CCNA_03076	0.11	+0.8
3,225,785	+		CCNA_03076	0.11	+2.8
3,225,791	+		CCNA_03076	0.12	-0.5
3,225,791	+		CCNA_03076	0.12	-0.4
3,225,792	+		CCNA_03076	0.12	-1.9
3,225,792	-		CCNA_03076	0.12	+0.2
3,225,793	-		CCNA_03076	0.12	+0.5
3,225,793	-		CCNA_03076	0.12	-0.9
3,225,803	+		CCNA_03076	0.12	-2.1
3,225,806	-		CCNA_03076	0.12	-0.2
3,225,810	-		CCNA_03076	0.12	+1.8
3,225,811	-		CCNA_03076	0.12	+0.2
3,225,811	-		CCNA_03076	0.12	+0.5
3,225,811	-		CCNA_03076	0.12	+1.2
3,225,833	+		CCNA_03076	0.13	+2.4
3,225,833	+		CCNA_03076	0.13	+2.8
3,225,833	+		CCNA_03076	0.13	+0.4
3,225,833	+		CCNA_03076	0.13	-1.1
3,225,833	+		CCNA_03076	0.13	+0.2
3,225,834	+		CCNA_03076	0.14	+0.5
3,225,834	+		CCNA_03076	0.14	-0.9
3,225,834	-		CCNA_03076	0.14	-0.6
3,225,838	+		CCNA_03076	0.14	+0.8
3,225,841	-		CCNA_03076	0.14	-0.5
3,225,841	-		CCNA_03076	0.14	+0.2
3,225,841	-		CCNA_03076	0.14	+0.8
3,225,852	+		CCNA_03076	0.14	-0.2
3,225,871	+		CCNA_03076	0.15	+1.1
3,225,879	-		CCNA_03076	0.16	-0.4
3,225,911	+		CCNA_03076	0.17	-0.9
3,225,911	+		CCNA_03076	0.17	-0.9
3,225,919	-		CCNA_03076	0.17	+0.3
3,225,954	+		CCNA_03076	0.19	-2.1
3,225,956	+		CCNA_03076	0.19	+1.3
3,225,961	+		CCNA_03076	0.19	-1.4
3,226,043	+		CCNA_03076	0.23	+0.7
3,226,043	+		CCNA_03076	0.23	+0.0
3,226,074	+		CCNA_03076	0.24	+2.2
3,226,103	-		CCNA_03076	0.25	-0.2
3,226,105	+		CCNA_03076	0.26	-1.4
3,226,106	+		CCNA_03076	0.26	+0.2
3,226,106	+		CCNA_03076	0.26	-1.4
3,226,111	+		CCNA_03076	0.26	+0.8
3,226,112	+		CCNA_03076	0.26	+0.8
3,226,121	+		CCNA_03076	0.26	+0.8
3,226,121	+		CCNA_03076	0.26	+1.8
3,226,121	+		CCNA_03076	0.26	+1.5
3,226,121	+		CCNA_03076	0.26	-1.6
3,226,121	+		CCNA_03076	0.26	+0.5
3,226,129	-		CCNA_03076	0.27	-1.1
3,226,129	-		CCNA_03076	0.27	+0.5
3,226,129	-		CCNA_03076	0.27	-0.8
3,226,134	+		CCNA_03076	0.27	-0.4
3,226,152	+		CCNA_03076	0.28	-1.4
3,226,153	-		CCNA_03076	0.28	-0.6
3,226,214	+		CCNA_03076	0.30	+1.8
3,226,261	-		CCNA_03076	0.32	+0.8
3,226,303	+		CCNA_03076	0.34	+1.8
3,226,303	-		CCNA_03076	0.34	+1.8
3,226,311	-		CCNA_03076	0.35	-0.4
3,226,323	-		CCNA_03076	0.35	-0.6
3,226,323	-		CCNA_03076	0.35	-0.4
3,226,366	+		CCNA_03076	0.37	-0.2
3,226,375	+				+2.8
3,226,375	+		CCNA_03076	0.38	-0.6
3,226,381	+		CCNA_03076	0.38	-0.8
3,226,389	-		CCNA_03076	0.38	+0.5
3,226,413	+		CCNA_03076	0.39	+1.5
3,226,413	+		CCNA_03076	0.39	+0.5
3,226,415	-		CCNA_03076	0.39	+2.1
3,226,421	-		CCNA_03076	0.40	-0.5
3,226,421	-		CCNA_03076	0.40	+1.2
3,226,427	-		CCNA_03076	0.40	+0.2