Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03069

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,219,702	-		CCNA_03067	0.35	+0.6
3,219,707	-		CCNA_03067	0.36	+2.5
3,219,708	+		CCNA_03067	0.37	-0.5
3,219,716	-		CCNA_03067	0.39	+2.2
3,219,743	+		CCNA_03067	0.45	+0.0
3,219,750	-		CCNA_03067	0.47	+2.7
3,219,751	-		CCNA_03067	0.47	+3.7
3,219,777	+		CCNA_03067	0.54	+0.2
3,219,792	-		CCNA_03067	0.58	+0.7
3,219,806	-		CCNA_03067	0.61	+2.4
3,219,825	+		CCNA_03067	0.66	+0.2
3,219,834	-		CCNA_03067	0.68	+1.6
3,219,834	-		CCNA_03067	0.68	+2.6
3,219,844	-		CCNA_03067	0.71	+1.6
3,219,876	-		CCNA_03067	0.79	+1.3
3,219,882	+		CCNA_03067	0.80	+0.8
3,219,884	+		CCNA_03067	0.81	+0.4
3,219,890	-		CCNA_03067	0.82	+1.3
3,220,031	+				-1.6
3,220,031	+				+2.8
3,220,031	+				-1.9
3,220,058	+				+0.8
3,220,077	+				-0.2
3,220,077	+				-1.2
3,220,085	-				+0.8
3,220,128	-				+0.5
3,220,135	+		CCNA_03068	0.10	-1.7
3,220,203	-		CCNA_03068	0.21	+1.8
3,220,205	-		CCNA_03068	0.21	+2.4
3,220,226	-		CCNA_03068	0.24	-1.5
3,220,284	+		CCNA_03068	0.34	-1.0
3,220,292	-		CCNA_03068	0.35	-0.6
3,220,298	-		CCNA_03068	0.36	+1.2
3,220,307	+		CCNA_03068	0.37	-1.1
3,220,315	-		CCNA_03068	0.39	-1.3
3,220,359	-		CCNA_03068	0.46	+2.8
3,220,361	+		CCNA_03068	0.46	+0.5
3,220,366	+		CCNA_03068	0.47	+1.2
3,220,368	-		CCNA_03068	0.47	-0.3
3,220,376	+		CCNA_03068	0.48	-1.0
3,220,381	+		CCNA_03068	0.49	-0.9
3,220,384	-		CCNA_03068	0.50	+0.3
3,220,384	-		CCNA_03068	0.50	+0.9
3,220,386	+		CCNA_03068	0.50	-0.8
3,220,386	+		CCNA_03068	0.50	+0.2
3,220,389	-		CCNA_03068	0.50	-2.9
3,220,394	-		CCNA_03068	0.51	+0.0
3,220,434	+		CCNA_03068	0.57	+0.0
3,220,438	-		CCNA_03068	0.58	-0.8
3,220,440	+		CCNA_03068	0.58	-0.5
3,220,448	-		CCNA_03068	0.60	+1.5
3,220,454	-		CCNA_03068	0.61	+2.2
3,220,455	-		CCNA_03068	0.61	+1.8
3,220,459	-		CCNA_03068	0.61	+0.7
3,220,508	+		CCNA_03068	0.69	+0.5
3,220,509	-		CCNA_03068	0.69	+0.4
3,220,516	-		CCNA_03068	0.70	-1.5
3,220,519	+		CCNA_03068	0.71	-0.5
3,220,524	+		CCNA_03068	0.72	+0.2
3,220,533	-		CCNA_03068	0.73	-1.7
3,220,541	+		CCNA_03068	0.74	-1.8
3,220,597	+		CCNA_03068	0.83	+0.0
3,220,602	+		CCNA_03068	0.84	+1.6
3,220,627	-		CCNA_03068	0.88	-0.4
3,220,629	+		CCNA_03068	0.88	+1.2
3,220,630	+		CCNA_03068	0.89	-1.6
3,220,638	-		CCNA_03068	0.90	+0.2
3,220,638	-		CCNA_03068	0.90	+1.2
3,220,643	-				-1.2
3,220,670	-				+1.2
3,220,672	+				+1.5
3,220,675	-				+1.8
3,220,692	+				+0.8
3,220,694	+				+0.2
3,220,747	-		CCNA_03069	0.13	+2.8
3,220,749	+		CCNA_03069	0.14	+2.8
3,220,749	+		CCNA_03069	0.14	+0.0
3,220,749	+		CCNA_03069	0.14	-0.5
3,220,749	+		CCNA_03069	0.14	-0.5
3,220,749	+		CCNA_03069	0.14	-0.5
3,220,749	+		CCNA_03069	0.14	-0.8
3,220,749	+				+2.8
3,220,749	+		CCNA_03069	0.14	-1.9
3,220,749	+		CCNA_03069	0.14	-0.5
3,220,749	+		CCNA_03069	0.14	+0.8
3,220,757	-		CCNA_03069	0.16	+0.8
3,220,757	-		CCNA_03069	0.16	+2.8
3,220,757	-		CCNA_03069	0.16	+0.2
3,220,757	-		CCNA_03069	0.16	+0.8
3,220,757	-		CCNA_03069	0.16	-1.7
3,220,757	-		CCNA_03069	0.16	-0.6
3,220,757	-		CCNA_03069	0.16	-0.3
3,220,757	-		CCNA_03069	0.16	-1.5
3,220,759	-		CCNA_03069	0.16	-2.4
3,220,791	-		CCNA_03069	0.25	+0.0
3,220,824	+		CCNA_03069	0.34	-1.3
3,220,825	-		CCNA_03069	0.34	-1.3
3,220,876	-		CCNA_03069	0.48	+1.2
3,220,899	-		CCNA_03069	0.54	+0.5
3,220,899	-		CCNA_03069	0.54	-0.6
3,220,964	-		CCNA_03069	0.72	-2.2
3,220,987	+		CCNA_03069	0.78	-1.2
3,220,996	+		CCNA_03069	0.80	+1.8
3,221,001	+		CCNA_03069	0.81	+0.5
3,221,009	-		CCNA_03069	0.84	+0.8
3,221,038	-				+0.2
3,221,070	+				+0.7
3,221,070	+				-2.8
3,221,071	-				+0.4
3,221,071	-				-0.3
3,221,071	-				+2.8
3,221,078	-				+0.2
3,221,078	-				-1.6
3,221,090	-				+1.2
3,221,095	-		CCNA_03070	0.10	-2.1
3,221,114	-		CCNA_03070	0.19	-0.6
3,221,180	+		CCNA_03070	0.50	-1.2
3,221,184	+		CCNA_03070	0.51	-0.7
3,221,186	+		CCNA_03070	0.52	-0.4
3,221,246	+		CCNA_03070	0.80	+1.0
3,221,354	-				-0.2
3,221,367	+				-0.9
3,221,367	+				+2.8
3,221,367	+				-1.2
3,221,375	-				-0.1
3,221,375	-				-0.9
3,221,375	-				-0.2
3,221,490	-				+0.8
3,221,558	-				-0.6
3,221,558	-				+0.5
3,221,573	+				+0.2
3,221,581	-				-1.0
3,221,640	+		CCNA_03071	0.11	-0.8
3,221,647	-		CCNA_03071	0.11	+0.8
3,221,648	-		CCNA_03071	0.11	-1.2
3,221,729	-		CCNA_03071	0.18	+0.0
3,221,734	-		CCNA_03071	0.18	-1.0
3,221,743	+		CCNA_03071	0.19	+0.2
3,221,743	+		CCNA_03071	0.19	+0.5
3,221,751	-		CCNA_03071	0.19	+0.8
3,221,753	+		CCNA_03071	0.19	+1.2
3,221,786	+		CCNA_03071	0.22	+0.8
3,221,787	+				+0.5
3,221,788	+		CCNA_03071	0.22	+0.5
3,221,794	-		CCNA_03071	0.23	+0.8
3,221,794	-		CCNA_03071	0.23	-0.5
3,221,795	-		CCNA_03071	0.23	-1.0
3,221,798	+		CCNA_03071	0.23	+1.5
3,221,798	-		CCNA_03071	0.23	+1.8
3,221,827	+		CCNA_03071	0.25	-0.8
3,221,835	-		CCNA_03071	0.26	-1.1
3,221,837	+		CCNA_03071	0.26	-2.2
3,221,875	-		CCNA_03071	0.29	+1.2
3,221,875	-		CCNA_03071	0.29	+0.4
3,221,924	+		CCNA_03071	0.33	-0.8
3,221,929	+		CCNA_03071	0.33	-2.3
3,221,932	-		CCNA_03071	0.33	-0.2
3,221,944	+		CCNA_03071	0.34	+1.0
3,221,944	+		CCNA_03071	0.34	-0.6
3,221,944	+		CCNA_03071	0.34	-0.6
3,221,944	+		CCNA_03071	0.34	+0.0
3,221,944	+		CCNA_03071	0.34	+0.0
3,221,944	+		CCNA_03071	0.34	+2.8
3,221,951	-		CCNA_03071	0.35	-2.2
3,221,952	-		CCNA_03071	0.35	+1.2
3,221,952	-		CCNA_03071	0.35	+0.2
3,221,952	-		CCNA_03071	0.35	-1.4
3,221,952	-		CCNA_03071	0.35	+0.1
3,221,952	-		CCNA_03071	0.35	-0.6
3,221,952	-		CCNA_03071	0.35	+0.0
3,221,958	+		CCNA_03071	0.36	+0.2
3,221,958	+		CCNA_03071	0.36	+1.8
3,221,959	+		CCNA_03071	0.36	+0.2
3,221,966	-		CCNA_03071	0.36	-1.1
3,221,967	-		CCNA_03071	0.36	-0.6
3,221,967	-		CCNA_03071	0.36	-0.1
3,222,006	+		CCNA_03071	0.39	-2.0
3,222,006	+		CCNA_03071	0.39	+0.8
3,222,019	+		CCNA_03071	0.40	+0.8
3,222,019	-		CCNA_03071	0.40	+0.8
3,222,027	-		CCNA_03071	0.41	-1.0