Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03057

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,209,762	-		CCNA_03054	0.65	+1.2
3,209,786	+		CCNA_03054	0.68	+1.0
3,209,791	+		CCNA_03054	0.68	+2.3
3,209,799	-		CCNA_03054	0.69	+0.8
3,209,802	+		CCNA_03054	0.69	+1.9
3,209,806	+		CCNA_03054	0.70	+2.2
3,209,811	+		CCNA_03054	0.70	+0.7
3,209,811	+		CCNA_03054	0.70	+1.4
3,209,819	-		CCNA_03054	0.71	-1.2
3,209,819	-		CCNA_03054	0.71	+1.8
3,209,853	+		CCNA_03054	0.75	+0.4
3,209,932	+		CCNA_03054	0.83	+1.9
3,209,951	-		CCNA_03054	0.85	-1.9
3,209,961	-		CCNA_03054	0.86	+0.2
3,209,987	+		CCNA_03054	0.89	+2.0
3,209,995	-				-0.5
3,210,029	+				+2.2
3,210,029	+				+2.4
3,210,083	+				-1.7
3,210,107	+				+0.6
3,210,115	+				-0.1
3,210,163	+				-0.4
3,210,170	+				+1.8
3,210,175	+				-1.0
3,210,245	-				-0.4
3,210,245	-				-0.3
3,210,254	-				+0.2
3,210,254	-				-1.0
3,210,267	+				+0.2
3,210,267	+				-1.0
3,210,267	+				-1.4
3,210,275	-				+0.5
3,210,275	-				-0.4
3,210,275	-				+0.2
3,210,275	-				-2.7
3,210,275	-				-0.6
3,210,277	+				+0.3
3,210,285	-				+2.8
3,210,338	-		CCNA_03056	0.23	-0.7
3,210,382	+		CCNA_03056	0.34	+1.2
3,210,469	+				+2.8
3,210,496	+		CCNA_03056	0.63	-0.7
3,210,497	+		CCNA_03056	0.63	-0.5
3,210,504	-		CCNA_03056	0.65	-0.3
3,210,506	+		CCNA_03056	0.66	+0.5
3,210,563	-		CCNA_03056	0.80	-0.2
3,210,587	+		CCNA_03056	0.86	-0.4
3,210,595	-		CCNA_03056	0.88	-0.1
3,210,595	-		CCNA_03056	0.88	-0.4
3,210,606	-				+1.2
3,210,629	+				-1.3
3,210,647	+				-1.3
3,210,668	-				+0.1
3,210,753	+				+0.8
3,210,787	+		CCNA_03057	0.13	-0.9
3,210,800	-		CCNA_03057	0.17	-1.2
3,210,838	-		CCNA_03057	0.27	+0.2
3,210,838	-		CCNA_03057	0.27	-0.7
3,210,844	+		CCNA_03057	0.29	-0.9
3,210,857	+		CCNA_03057	0.33	-0.8
3,210,865	-		CCNA_03057	0.35	-1.2
3,210,872	+		CCNA_03057	0.37	+0.6
3,210,877	+		CCNA_03057	0.38	+1.5
3,210,915	+		CCNA_03057	0.48	-0.0
3,211,076	-				-1.4
3,211,104	+				+1.5
3,211,106	-				+1.2
3,211,113	-				+2.8
3,211,113	-				+0.9
3,211,116	+				+0.8
3,211,119	-				+0.2
3,211,124	-				+0.1
3,211,129	+				+0.2
3,211,137	-				+1.8
3,211,150	+				-1.6
3,211,200	-		CCNA_03058	0.10	+0.2
3,211,202	+		CCNA_03058	0.11	+2.8
3,211,210	-		CCNA_03058	0.11	+1.8
3,211,215	+		CCNA_03058	0.12	-1.0
3,211,230	+		CCNA_03058	0.14	+1.2
3,211,243	-		CCNA_03058	0.15	-0.4
3,211,405	+		CCNA_03058	0.33	+1.8
3,211,416	+		CCNA_03058	0.34	+1.2
3,211,431	-		CCNA_03058	0.36	+1.5
3,211,431	-		CCNA_03058	0.36	+0.2
3,211,483	+		CCNA_03058	0.41	-1.1
3,211,491	-		CCNA_03058	0.42	-0.8
3,211,499	-		CCNA_03058	0.43	-1.4
3,211,535	-		CCNA_03058	0.47	+0.7
3,211,570	-		CCNA_03058	0.51	-0.5
3,211,570	-		CCNA_03058	0.51	+0.5
3,211,572	+		CCNA_03058	0.51	-1.3
3,211,584	+		CCNA_03058	0.52	+0.5
3,211,617	-		CCNA_03058	0.56	+0.9
3,211,641	+		CCNA_03058	0.59	+2.8
3,211,641	-				+1.2
3,211,645	+		CCNA_03058	0.59	+1.2
3,211,665	-		CCNA_03058	0.61	-0.2
3,211,670	-		CCNA_03058	0.62	+1.2
3,211,670	-		CCNA_03058	0.62	+3.8
3,211,670	-		CCNA_03058	0.62	-0.4
3,211,696	+		CCNA_03058	0.65	-0.9
3,211,706	-		CCNA_03058	0.66	-1.2
3,211,708	+		CCNA_03058	0.66	+0.8
3,211,732	-		CCNA_03058	0.69	+1.8
3,211,739	+		CCNA_03058	0.69	+1.6
3,211,751	+		CCNA_03058	0.71	+0.1
3,211,780	+		CCNA_03058	0.74	-2.5
3,211,781	-		CCNA_03058	0.74	-0.9
3,211,823	+		CCNA_03058	0.79	-0.4
3,211,823	+		CCNA_03058	0.79	+1.8
3,211,831	-		CCNA_03058	0.79	-2.1
3,211,870	-		CCNA_03058	0.84	-0.7
3,211,885	+		CCNA_03058	0.85	+1.8
3,211,917	-		CCNA_03058	0.89	+0.6
3,211,917	-		CCNA_03058	0.89	-0.4
3,211,996	-				+1.2
3,212,023	-				+0.2
3,212,025	+				+1.1
3,212,051	+				-0.7
3,212,053	-				+0.2
3,212,059	-				-1.9
3,212,076	-		CCNA_03059	0.11	-2.6
3,212,091	+		CCNA_03059	0.14	+1.6
3,212,094	-		CCNA_03059	0.14	+0.8
3,212,094	-		CCNA_03059	0.14	-0.5
3,212,094	-		CCNA_03059	0.14	+0.8