Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03032

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,185,616	-				+0.4
3,185,659	+				+0.6
3,185,661	+				-1.4
3,185,661	+				-1.2
3,185,669	+				+0.7
3,185,669	-				-1.9
3,185,669	-				-0.9
3,185,731	+				+0.8
3,185,749	+				-0.4
3,185,767	+				-0.6
3,185,767	+				+0.5
3,185,775	-				-1.2
3,185,928	-		CCNA_03031	0.21	+0.5
3,185,994	-		CCNA_03031	0.29	-1.0
3,185,999	+		CCNA_03031	0.29	+0.5
3,186,006	-		CCNA_03031	0.30	-2.0
3,186,006	-		CCNA_03031	0.30	-0.8
3,186,006	-		CCNA_03031	0.30	-1.1
3,186,021	+		CCNA_03031	0.32	+0.0
3,186,029	-		CCNA_03031	0.33	-0.9
3,186,031	+		CCNA_03031	0.33	+2.8
3,186,031	+		CCNA_03031	0.33	+0.2
3,186,031	+		CCNA_03031	0.33	-0.3
3,186,039	-		CCNA_03031	0.34	-0.5
3,186,039	-		CCNA_03031	0.34	-1.9
3,186,039	-		CCNA_03031	0.34	+0.5
3,186,039	-		CCNA_03031	0.34	-1.3
3,186,039	-		CCNA_03031	0.34	-1.3
3,186,044	-		CCNA_03031	0.35	+0.8
3,186,068	+		CCNA_03031	0.38	+1.2
3,186,071	-		CCNA_03031	0.38	+0.2
3,186,107	+		CCNA_03031	0.42	+0.2
3,186,127	-		CCNA_03031	0.45	+1.8
3,186,175	-		CCNA_03031	0.50	-1.6
3,186,197	+		CCNA_03031	0.53	-0.9
3,186,200	-		CCNA_03031	0.53	+1.8
3,186,200	-		CCNA_03031	0.53	+1.8
3,186,202	+		CCNA_03031	0.54	-1.3
3,186,205	-		CCNA_03031	0.54	+1.8
3,186,233	-		CCNA_03031	0.57	-0.3
3,186,242	-		CCNA_03031	0.58	-1.2
3,186,257	+		CCNA_03031	0.60	+0.5
3,186,318	+		CCNA_03031	0.67	+0.8
3,186,328	-		CCNA_03031	0.69	-0.8
3,186,330	+		CCNA_03031	0.69	+1.8
3,186,330	+		CCNA_03031	0.69	+1.8
3,186,338	-		CCNA_03031	0.70	-0.3
3,186,363	+		CCNA_03031	0.73	+1.2
3,186,481	+		CCNA_03031	0.87	-0.5
3,186,499	-		CCNA_03031	0.89	-1.9
3,186,523	-				+0.5
3,186,523	-				-1.5
3,186,523	-				+0.4
3,186,564	+				+1.8
3,186,597	-				-2.0
3,186,598	+				-1.4
3,186,623	-				-1.5
3,186,633	+				+1.8
3,186,634	+				-0.3
3,186,649	-				-0.8
3,186,649	-				-1.1
3,186,692	-				-2.4
3,186,738	+		CCNA_03032	0.11	-0.6
3,186,770	-		CCNA_03032	0.13	-1.3
3,186,770	-		CCNA_03032	0.13	-1.4
3,186,810	+		CCNA_03032	0.16	+1.8
3,186,810	+		CCNA_03032	0.16	-0.6
3,186,810	+		CCNA_03032	0.16	-1.0
3,186,818	-		CCNA_03032	0.16	-1.0
3,186,818	-		CCNA_03032	0.16	-1.1
3,186,818	-		CCNA_03032	0.16	-0.3
3,186,818	-		CCNA_03032	0.16	+0.2
3,186,818	-		CCNA_03032	0.16	-1.3
3,186,834	+		CCNA_03032	0.18	-0.2
3,186,835	+		CCNA_03032	0.18	-2.3
3,186,842	-		CCNA_03032	0.18	-0.8
3,186,856	+		CCNA_03032	0.19	-0.8
3,186,856	+		CCNA_03032	0.19	+0.0
3,186,864	-		CCNA_03032	0.20	-1.3
3,186,880	+		CCNA_03032	0.21	-2.0
3,186,888	-		CCNA_03032	0.21	-1.8
3,186,968	-		CCNA_03032	0.27	-1.0
3,186,970	+		CCNA_03032	0.27	+1.0
3,186,973	-		CCNA_03032	0.27	+1.2
3,186,975	+		CCNA_03032	0.28	-0.2
3,186,991	+		CCNA_03032	0.29	-2.2
3,186,994	-		CCNA_03032	0.29	-0.9
3,186,999	-		CCNA_03032	0.29	-0.8
3,187,011	+		CCNA_03032	0.30	-0.2
3,187,019	-		CCNA_03032	0.31	-1.3
3,187,019	-		CCNA_03032	0.31	-0.6
3,187,038	+		CCNA_03032	0.32	+0.0
3,187,059	-		CCNA_03032	0.34	+0.5
3,187,063	+		CCNA_03032	0.34	-1.0
3,187,068	+		CCNA_03032	0.34	+1.2
3,187,143	+		CCNA_03032	0.40	-0.1
3,187,206	-		CCNA_03032	0.44	+0.7
3,187,213	+		CCNA_03032	0.45	-0.3
3,187,218	+		CCNA_03032	0.45	+0.5
3,187,218	+		CCNA_03032	0.45	-1.0
3,187,227	-		CCNA_03032	0.46	+0.2
3,187,263	-		CCNA_03032	0.48	+1.1
3,187,286	-		CCNA_03032	0.50	+1.8
3,187,286	-		CCNA_03032	0.50	+0.2
3,187,305	+		CCNA_03032	0.51	-0.3
3,187,320	+		CCNA_03032	0.52	+1.2
3,187,328	-		CCNA_03032	0.53	-0.8
3,187,395	-		CCNA_03032	0.58	-1.0
3,187,397	-		CCNA_03032	0.58	-0.3
3,187,402	-		CCNA_03032	0.58	-1.0
3,187,418	+		CCNA_03032	0.59	-1.3
3,187,418	+		CCNA_03032	0.59	+0.5
3,187,418	+		CCNA_03032	0.59	+1.2
3,187,433	+		CCNA_03032	0.60	+0.5
3,187,447	+		CCNA_03032	0.61	+0.5
3,187,452	+		CCNA_03032	0.62	-2.3
3,187,488	-		CCNA_03032	0.64	-2.2
3,187,488	-		CCNA_03032	0.64	-1.4
3,187,516	+		CCNA_03032	0.66	+0.2
3,187,516	+		CCNA_03032	0.66	-0.2
3,187,524	-		CCNA_03032	0.67	-0.9
3,187,524	-		CCNA_03032	0.67	-1.3
3,187,538	+		CCNA_03032	0.68	-0.6
3,187,538	+		CCNA_03032	0.68	+0.2
3,187,538	+		CCNA_03032	0.68	-1.7
3,187,540	+		CCNA_03032	0.68	+0.5
3,187,540	+		CCNA_03032	0.68	-0.8
3,187,545	+		CCNA_03032	0.68	-0.2
3,187,545	+		CCNA_03032	0.68	+0.0
3,187,551	+		CCNA_03032	0.69	-0.8
3,187,559	-		CCNA_03032	0.69	+1.2
3,187,559	-		CCNA_03032	0.69	-0.2
3,187,559	-		CCNA_03032	0.69	+0.2
3,187,559	-		CCNA_03032	0.69	+1.5
3,187,559	-		CCNA_03032	0.69	+1.8
3,187,559	-		CCNA_03032	0.69	-1.5
3,187,569	+		CCNA_03032	0.70	+0.0
3,187,582	+		CCNA_03032	0.71	+1.2
3,187,584	+		CCNA_03032	0.71	-0.2
3,187,590	-		CCNA_03032	0.72	+0.5
3,187,599	+		CCNA_03032	0.72	-2.3
3,187,600	-		CCNA_03032	0.72	-1.2
3,187,659	+		CCNA_03032	0.76	-0.6
3,187,659	+		CCNA_03032	0.76	-1.3
3,187,667	-		CCNA_03032	0.77	+1.2
3,187,667	-		CCNA_03032	0.77	-1.1
3,187,667	-		CCNA_03032	0.77	-0.5
3,187,667	-		CCNA_03032	0.77	+0.1
3,187,687	+		CCNA_03032	0.78	-0.8
3,187,687	+		CCNA_03032	0.78	-0.9
3,187,687	+		CCNA_03032	0.78	+1.5
3,187,687	+		CCNA_03032	0.78	-0.5
3,187,687	+		CCNA_03032	0.78	+0.5
3,187,687	+		CCNA_03032	0.78	-0.3
3,187,688	-		CCNA_03032	0.79	+0.2
3,187,695	-		CCNA_03032	0.79	-0.9
3,187,695	-		CCNA_03032	0.79	-2.2
3,187,695	-		CCNA_03032	0.79	-1.0
3,187,695	-		CCNA_03032	0.79	-0.8
3,187,695	-		CCNA_03032	0.79	+1.8
3,187,695	-		CCNA_03032	0.79	+1.8
3,187,695	-		CCNA_03032	0.79	-0.5
3,187,695	-		CCNA_03032	0.79	+0.5
3,187,695	-		CCNA_03032	0.79	-1.7
3,187,695	-		CCNA_03032	0.79	-0.3
3,187,767	+		CCNA_03032	0.84	-0.8
3,187,775	-		CCNA_03032	0.85	+0.5
3,187,829	-		CCNA_03032	0.89	+1.8
3,187,845	-		CCNA_03032	0.90	-0.5
3,187,851	-				-0.4
3,187,859	-				+1.2
3,187,870	+				+0.2
3,187,871	-				-0.5
3,187,872	-				-0.3
3,187,878	-				-1.3
3,187,909	+				+0.5
3,187,909	+				-1.2
3,187,909	+				-0.9
3,187,917	-				-1.4
3,187,917	-				-1.5
3,187,927	-				+0.2
3,187,936	+				+0.5
3,187,954	+				+0.8
3,187,954	+				-0.2
3,187,962	-				-0.8
3,188,023	+				-0.8
3,188,031	-				-0.8
3,188,038	+				-1.7
3,188,120	-				+1.2
3,188,122	+				-0.3
3,188,122	+				+0.0
3,188,123	+				+0.2
3,188,130	-				-0.5
3,188,131	-				-0.7
3,188,155	+		CCNA_03033	0.10	+0.4
3,188,155	+		CCNA_03033	0.10	+0.8
3,188,163	-		CCNA_03033	0.11	-0.6
3,188,163	-		CCNA_03033	0.11	+0.5
3,188,187	-		CCNA_03033	0.14	+2.8
3,188,206	+		CCNA_03033	0.16	-1.8
3,188,221	-		CCNA_03033	0.18	-0.5
3,188,221	-		CCNA_03033	0.18	-2.1
3,188,238	+		CCNA_03033	0.20	+2.1
3,188,246	-		CCNA_03033	0.21	-2.0
3,188,246	-		CCNA_03033	0.21	+0.1
3,188,247	+		CCNA_03033	0.21	-0.8
3,188,247	+		CCNA_03033	0.21	+0.9
3,188,310	+		CCNA_03033	0.29	+0.5
3,188,310	+		CCNA_03033	0.29	+0.2
3,188,320	+		CCNA_03033	0.30	-0.2
3,188,320	+		CCNA_03033	0.30	+1.2
3,188,323	-		CCNA_03033	0.30	+0.2
3,188,323	-		CCNA_03033	0.30	-2.0
3,188,327	+		CCNA_03033	0.31	+0.2
3,188,328	-		CCNA_03033	0.31	-0.7
3,188,328	-		CCNA_03033	0.31	-1.9
3,188,328	-		CCNA_03033	0.31	-0.2
3,188,400	+		CCNA_03033	0.40	-0.1
3,188,417	+		CCNA_03033	0.42	+1.7
3,188,425	-		CCNA_03033	0.43	-0.2
3,188,425	-		CCNA_03033	0.43	-1.5
3,188,459	-		CCNA_03033	0.47	-0.8
3,188,495	+		CCNA_03033	0.51	+2.0
3,188,503	-		CCNA_03033	0.52	-1.8
3,188,508	-		CCNA_03033	0.53	-0.3
3,188,510	+		CCNA_03033	0.53	+0.7
3,188,532	+		CCNA_03033	0.56	+1.2
3,188,532	+		CCNA_03033	0.56	+1.3
3,188,532	+		CCNA_03033	0.56	+0.1
3,188,540	-		CCNA_03033	0.57	-0.3
3,188,540	-		CCNA_03033	0.57	+0.5
3,188,565	+		CCNA_03033	0.60	-1.8
3,188,611	+		CCNA_03033	0.65	-0.5
3,188,613	+		CCNA_03033	0.66	+0.4
3,188,672	+		CCNA_03033	0.73	+0.5
3,188,693	-				+1.8
3,188,726	-		CCNA_03033	0.79	-1.2
3,188,744	+		CCNA_03033	0.81	+0.0
3,188,776	+		CCNA_03033	0.85	+0.7
3,188,870	-				-0.3
3,188,870	-				-1.1
3,188,891	+				+0.1
3,188,933	+		CCNA_03034	0.13	-0.1
3,188,950	-		CCNA_03034	0.22	-0.8
3,188,979	-		CCNA_03034	0.36	+0.8
3,188,988	+		CCNA_03034	0.41	-1.3
3,188,988	+		CCNA_03034	0.41	-1.5