Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03020

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,173,529	-		CCNA_03019	0.68	-0.4
3,173,569	+		CCNA_03019	0.70	+1.3
3,173,578	+		CCNA_03019	0.70	-1.4
3,173,586	-		CCNA_03019	0.70	+0.9
3,173,602	+		CCNA_03019	0.71	+1.2
3,173,617	+		CCNA_03019	0.71	+1.7
3,173,644	+		CCNA_03019	0.72	+0.7
3,173,652	-		CCNA_03019	0.73	-1.4
3,173,658	+		CCNA_03019	0.73	+0.9
3,173,686	-		CCNA_03019	0.74	+0.9
3,173,687	+		CCNA_03019	0.74	+1.9
3,173,713	+		CCNA_03019	0.75	+0.1
3,173,728	+		CCNA_03019	0.75	-0.2
3,173,728	+		CCNA_03019	0.75	-1.7
3,173,753	-		CCNA_03019	0.76	+1.3
3,173,753	-		CCNA_03019	0.76	+1.3
3,173,761	-		CCNA_03019	0.76	+0.9
3,173,761	-		CCNA_03019	0.76	+0.9
3,173,769	-		CCNA_03019	0.77	+2.9
3,173,791	+		CCNA_03019	0.78	+0.9
3,173,796	+		CCNA_03019	0.78	-0.8
3,173,799	-		CCNA_03019	0.78	-1.4
3,173,806	+		CCNA_03019	0.78	-0.6
3,173,843	+		CCNA_03019	0.79	-0.1
3,173,858	+		CCNA_03019	0.80	+1.3
3,173,917	+		CCNA_03019	0.82	+0.2
3,173,930	+		CCNA_03019	0.82	-0.1
3,173,930	+		CCNA_03019	0.82	-0.3
3,173,938	+		CCNA_03019	0.83	+0.2
3,173,945	+		CCNA_03019	0.83	-0.3
3,173,963	-		CCNA_03019	0.84	+0.1
3,173,966	+		CCNA_03019	0.84	-0.9
3,173,966	+		CCNA_03019	0.84	-1.2
3,173,974	-		CCNA_03019	0.84	-1.2
3,174,049	+		CCNA_03019	0.87	-1.2
3,174,049	+		CCNA_03019	0.87	+0.8
3,174,054	+		CCNA_03019	0.87	-0.1
3,174,062	-		CCNA_03019	0.87	-1.2
3,174,081	-		CCNA_03019	0.88	+0.0
3,174,114	+		CCNA_03019	0.89	+0.6
3,174,114	+		CCNA_03019	0.89	+0.3
3,174,207	+				-2.1
3,174,207	+				+0.3
3,174,225	+				+2.9
3,174,228	-				-1.7
3,174,258	-				+1.3
3,174,279	-				+1.9
3,174,279	-				+1.3
3,174,317	+				+1.9
3,174,327	+				+0.9
3,174,335	-				+1.3
3,174,335	-				-1.6
3,174,374	+				+0.1
3,174,376	+				+2.3
3,174,376	+				-0.8
3,174,376	+				-0.4
3,174,376	+				-1.4
3,174,384	-				+2.5
3,174,384	-				-0.6
3,174,384	-				-0.4
3,174,403	-				-1.4
3,174,483	+				+0.9
3,174,483	+				+1.3
3,174,505	+				-0.4
3,174,513	-				+1.3
3,174,554	+				-0.1
3,174,579	-				+0.6
3,174,619	-				+1.9
3,174,644	+		CCNA_03020	0.12	-1.9
3,174,680	-		CCNA_03020	0.15	+0.6
3,174,755	-		CCNA_03020	0.22	+0.5
3,174,818	-		CCNA_03020	0.27	-1.4
3,174,824	-		CCNA_03020	0.28	+1.9
3,174,828	+		CCNA_03020	0.28	+1.9
3,174,831	+		CCNA_03020	0.29	-0.4
3,174,831	+		CCNA_03020	0.29	+1.3
3,174,831	+		CCNA_03020	0.29	+0.6
3,174,839	+		CCNA_03020	0.29	+1.3
3,174,839	-		CCNA_03020	0.29	-0.9
3,174,839	-		CCNA_03020	0.29	-0.7
3,174,839	-		CCNA_03020	0.29	-1.9
3,174,839	-		CCNA_03020	0.29	+0.3
3,174,868	+		CCNA_03020	0.32	-0.6
3,174,891	-		CCNA_03020	0.34	-1.4
3,174,892	+		CCNA_03020	0.34	+0.4
3,174,893	-		CCNA_03020	0.34	-0.6
3,174,897	+		CCNA_03020	0.34	+0.6
3,174,943	-		CCNA_03020	0.39	-1.4
3,174,951	+		CCNA_03020	0.39	-1.2
3,174,954	-		CCNA_03020	0.40	+0.2
3,174,956	-		CCNA_03020	0.40	-0.9
3,174,958	+		CCNA_03020	0.40	+0.1
3,174,969	+		CCNA_03020	0.41	-0.9
3,175,004	-		CCNA_03020	0.44	+0.6
3,175,046	+		CCNA_03020	0.48	-1.0
3,175,054	+		CCNA_03020	0.48	+1.3
3,175,054	+		CCNA_03020	0.48	-1.8
3,175,062	-		CCNA_03020	0.49	+1.0
3,175,062	-		CCNA_03020	0.49	+0.4
3,175,077	+		CCNA_03020	0.50	-1.9
3,175,080	-		CCNA_03020	0.51	+0.9
3,175,098	+		CCNA_03020	0.52	-0.9
3,175,110	+		CCNA_03020	0.53	-1.1
3,175,116	-		CCNA_03020	0.54	-1.7
3,175,116	-		CCNA_03020	0.54	-1.6
3,175,116	-		CCNA_03020	0.54	+1.1
3,175,133	+		CCNA_03020	0.55	-1.5
3,175,136	-		CCNA_03020	0.56	-0.1
3,175,141	-		CCNA_03020	0.56	-2.3
3,175,143	+		CCNA_03020	0.56	-0.5
3,175,144	+		CCNA_03020	0.56	-0.6
3,175,144	+		CCNA_03020	0.56	-0.4
3,175,152	-		CCNA_03020	0.57	+1.3
3,175,152	-		CCNA_03020	0.57	-0.7
3,175,152	-		CCNA_03020	0.57	+0.1
3,175,155	+		CCNA_03020	0.57	+0.1
3,175,155	+		CCNA_03020	0.57	-1.9
3,175,155	+		CCNA_03020	0.57	-0.6
3,175,155	+		CCNA_03020	0.57	+0.3
3,175,155	+		CCNA_03020	0.57	-0.4
3,175,155	+		CCNA_03020	0.57	+0.1
3,175,155	+		CCNA_03020	0.57	+2.9
3,175,155	+		CCNA_03020	0.57	+0.5
3,175,155	+		CCNA_03020	0.57	-0.6
3,175,155	+		CCNA_03020	0.57	-0.7
3,175,163	-		CCNA_03020	0.58	-1.5
3,175,163	-		CCNA_03020	0.58	-2.0
3,175,163	-		CCNA_03020	0.58	-1.3
3,175,163	-		CCNA_03020	0.58	+0.2
3,175,163	-		CCNA_03020	0.58	-1.1
3,175,163	-		CCNA_03020	0.58	-0.5
3,175,163	-		CCNA_03020	0.58	+0.3
3,175,163	-		CCNA_03020	0.58	-1.1
3,175,163	-		CCNA_03020	0.58	-1.9
3,175,163	-		CCNA_03020	0.58	-0.5
3,175,177	+		CCNA_03020	0.59	+0.1
3,175,177	+		CCNA_03020	0.59	-0.4
3,175,185	-		CCNA_03020	0.60	-1.0
3,175,216	+		CCNA_03020	0.63	-0.3
3,175,221	+		CCNA_03020	0.63	-1.4
3,175,298	-		CCNA_03020	0.70	+0.9
3,175,300	+		CCNA_03020	0.70	-2.0
3,175,313	-		CCNA_03020	0.71	-1.0
3,175,340	+		CCNA_03020	0.74	-1.8
3,175,346	+		CCNA_03020	0.74	-0.3
3,175,348	-		CCNA_03020	0.74	-0.6
3,175,371	-		CCNA_03020	0.77	-0.2
3,175,433	-		CCNA_03020	0.82	+0.3
3,175,435	+		CCNA_03020	0.82	+0.9
3,175,474	+		CCNA_03020	0.86	-0.4
3,175,474	+		CCNA_03020	0.86	+1.7
3,175,487	-		CCNA_03020	0.87	-1.8
3,175,512	+		CCNA_03020	0.89	-0.9
3,175,512	+		CCNA_03020	0.89	-0.9
3,175,515	-		CCNA_03020	0.89	+0.6
3,175,522	+		CCNA_03020	0.90	-1.6
3,175,578	+				+0.3
3,175,578	+				-0.1
3,175,586	-				-0.6
3,175,621	-				-0.8
3,175,636	-				-2.9
3,175,666	+				+1.3
3,175,669	-		CCNA_03021	0.11	+0.2
3,175,674	-		CCNA_03021	0.14	+0.4
3,175,716	+		CCNA_03021	0.33	-1.4
3,175,728	-		CCNA_03021	0.39	-0.3
3,175,750	-		CCNA_03021	0.49	-0.8
3,175,761	+		CCNA_03021	0.54	+0.3
3,175,764	-		CCNA_03021	0.56	+1.3
3,175,769	-		CCNA_03021	0.58	+0.6
3,175,769	-		CCNA_03021	0.58	-0.1
3,175,808	+		CCNA_03021	0.77	+1.3
3,175,808	+		CCNA_03021	0.77	+0.9
3,175,812	+		CCNA_03021	0.78	-1.7
3,175,821	-		CCNA_03021	0.83	+1.9
3,175,831	-				+1.6
3,175,837	+				-0.1
3,175,837	+				+0.3
3,175,845	-				+2.9
3,175,894	+				+1.3
3,175,925	-				-0.1
3,175,925	-				+0.3
3,175,925	-				-0.3
3,175,942	+				+0.6
3,175,964	+		CCNA_03022	0.12	-0.4
3,175,965	+		CCNA_03022	0.12	+0.9
3,175,965	+		CCNA_03022	0.12	-2.0
3,175,973	-		CCNA_03022	0.12	+0.2
3,175,976	+		CCNA_03022	0.13	-0.4
3,175,979	-		CCNA_03022	0.13	+0.3
3,176,028	+		CCNA_03022	0.17	-0.1
3,176,033	+		CCNA_03022	0.17	+0.6
3,176,033	+		CCNA_03022	0.17	+0.6
3,176,041	-		CCNA_03022	0.18	+0.1
3,176,041	-		CCNA_03022	0.18	+2.9
3,176,041	-		CCNA_03022	0.18	-0.5
3,176,043	+		CCNA_03022	0.18	-0.6
3,176,051	-		CCNA_03022	0.19	-0.4
3,176,051	-		CCNA_03022	0.19	+0.7
3,176,051	-		CCNA_03022	0.19	+1.3
3,176,071	+		CCNA_03022	0.21	+0.1
3,176,084	-		CCNA_03022	0.22	-0.3
3,176,091	+		CCNA_03022	0.22	+0.1
3,176,139	+		CCNA_03022	0.26	-1.8
3,176,143	+		CCNA_03022	0.27	-0.1
3,176,193	+		CCNA_03022	0.31	-0.1
3,176,196	-		CCNA_03022	0.31	-0.6
3,176,198	+		CCNA_03022	0.31	-1.0
3,176,201	-		CCNA_03022	0.32	+0.4
3,176,217	+		CCNA_03022	0.33	-1.7
3,176,217	+		CCNA_03022	0.33	-1.9
3,176,225	-		CCNA_03022	0.34	-2.0
3,176,225	-		CCNA_03022	0.34	-0.4
3,176,225	-		CCNA_03022	0.34	+0.7
3,176,237	+		CCNA_03022	0.35	-1.4
3,176,237	+		CCNA_03022	0.35	-1.3
3,176,320	-		CCNA_03022	0.42	-0.3
3,176,353	-		CCNA_03022	0.44	+2.0
3,176,353	-		CCNA_03022	0.44	+1.9
3,176,362	-		CCNA_03022	0.45	+2.1
3,176,385	+		CCNA_03022	0.47	-2.0
3,176,385	+		CCNA_03022	0.47	+0.9
3,176,393	-		CCNA_03022	0.48	-0.3
3,176,393	-		CCNA_03022	0.48	+0.1
3,176,393	-		CCNA_03022	0.48	-0.2
3,176,421	-		CCNA_03022	0.50	-1.4
3,176,427	+		CCNA_03022	0.51	-0.4
3,176,433	-		CCNA_03022	0.51	+0.4
3,176,450	+		CCNA_03022	0.53	-0.7
3,176,491	+		CCNA_03022	0.56	+0.6
3,176,503	+		CCNA_03022	0.57	-1.9
3,176,578	+		CCNA_03022	0.63	+0.3
3,176,583	+		CCNA_03022	0.64	-1.8
3,176,586	-		CCNA_03022	0.64	+0.6
3,176,605	-		CCNA_03022	0.66	+0.7
3,176,605	-		CCNA_03022	0.66	+0.8