Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02965

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,120,786	+				+2.6
3,120,798	+				+2.6
3,120,860	+				+3.3
3,120,895	+				+2.0
3,120,899	-				-0.8
3,120,922	+				+0.5
3,121,057	+				+0.4
3,121,096	+				-1.8
3,121,105	+				-0.3
3,121,116	-		CCNA_02965	0.10	+0.9
3,121,125	+		CCNA_02965	0.11	+0.6
3,121,156	+		CCNA_02965	0.13	-0.6
3,121,164	-		CCNA_02965	0.14	+0.7
3,121,169	-		CCNA_02965	0.14	+1.0
3,121,198	+		CCNA_02965	0.17	-1.5
3,121,235	-		CCNA_02965	0.20	+0.4
3,121,255	-		CCNA_02965	0.21	+1.5
3,121,334	+		CCNA_02965	0.28	+2.0
3,121,334	+		CCNA_02965	0.28	+0.4
3,121,334	+				+3.0
3,121,334	+		CCNA_02965	0.28	-0.9
3,121,420	-		CCNA_02965	0.35	+2.2
3,121,425	+		CCNA_02965	0.35	+0.6
3,121,428	-		CCNA_02965	0.35	+0.9
3,121,428	-		CCNA_02965	0.35	+2.6
3,121,430	+		CCNA_02965	0.35	-0.1
3,121,474	-		CCNA_02965	0.39	+1.0
3,121,476	+		CCNA_02965	0.39	-1.8
3,121,489	-		CCNA_02965	0.40	-1.0
3,121,505	-		CCNA_02965	0.41	+0.3
3,121,513	+		CCNA_02965	0.42	+0.2
3,121,521	-		CCNA_02965	0.43	-0.0
3,121,521	-		CCNA_02965	0.43	-0.2
3,121,562	+		CCNA_02965	0.46	-0.0
3,121,578	+		CCNA_02965	0.47	+3.0
3,121,579	+		CCNA_02965	0.47	+1.0
3,121,581	-		CCNA_02965	0.48	+1.0
3,121,612	-		CCNA_02965	0.50	-1.7
3,121,659	+		CCNA_02965	0.54	-1.8
3,121,723	+		CCNA_02965	0.59	-0.2
3,121,731	-		CCNA_02965	0.60	-0.1
3,121,743	-		CCNA_02965	0.61	+1.7
3,121,743	-		CCNA_02965	0.61	+1.5
3,121,749	+		CCNA_02965	0.61	+0.6
3,121,767	+		CCNA_02965	0.63	-0.4
3,121,774	-		CCNA_02965	0.63	+0.8
3,121,781	+		CCNA_02965	0.64	-0.9
3,121,790	-		CCNA_02965	0.64	+0.8
3,121,798	+		CCNA_02965	0.65	+0.6
3,121,806	+		CCNA_02965	0.66	+1.4
3,121,821	-		CCNA_02965	0.67	+0.5
3,121,869	-		CCNA_02965	0.71	+3.0
3,121,952	+		CCNA_02965	0.77	-2.1
3,122,011	+		CCNA_02965	0.82	-0.2
3,122,012	+		CCNA_02965	0.82	-1.6
3,122,077	+		CCNA_02965	0.88	+1.4
3,122,103	+		CCNA_02965	0.90	+2.0
3,122,103	+		CCNA_02965	0.90	+0.4
3,122,103	+		CCNA_02965	0.90	+0.2
3,122,111	-				+1.0
3,122,125	+				-0.5
3,122,133	-				+3.5
3,122,174	+				-0.1
3,122,191	+				-0.4
3,122,243	+				+0.6
3,122,243	+				+2.0
3,122,251	-				+2.4
3,122,251	-				+2.8
3,122,251	-				+2.2
3,122,267	+				+3.0
3,122,269	+				+1.4
3,122,277	-				+3.1
3,122,349	+		CCNA_02966	0.23	+3.0
3,122,368	+		CCNA_02966	0.26	-0.5
3,122,392	+		CCNA_02966	0.31	+3.0
3,122,416	+		CCNA_02966	0.36	-1.2
3,122,424	-		CCNA_02966	0.38	+0.5
3,122,424	-		CCNA_02966	0.38	+3.5
3,122,424	-		CCNA_02966	0.38	+1.8
3,122,470	+		CCNA_02966	0.48	+1.4
3,122,470	+		CCNA_02966	0.48	-0.4
3,122,475	+		CCNA_02966	0.49	-1.7
3,122,478	-		CCNA_02966	0.49	+0.4
3,122,543	-		CCNA_02966	0.63	+2.9
3,122,547	+		CCNA_02966	0.64	-0.2
3,122,562	-		CCNA_02966	0.67	-0.3
3,122,562	-		CCNA_02966	0.67	+2.0
3,122,648	+		CCNA_02966	0.85	+0.6
3,122,684	+				+1.0
3,122,703	+				+1.4
3,122,703	+				+0.6
3,122,737	-				-0.4
3,122,754	-				+3.2
3,122,755	+				+3.0
3,122,844	+				-1.1
3,122,854	+				+1.0
3,122,854	+				+0.2
3,122,865	+				+3.0
3,122,891	+				-1.3
3,122,891	+				-1.8
3,122,899	-				+0.2
3,122,921	+				-1.4
3,122,922	-				+3.5
3,122,934	-				-1.8
3,122,960	+				-0.5
3,122,960	+				+0.6
3,122,960	+				-2.2
3,122,965	+				+0.4
3,122,968	-				+3.0
3,122,968	-				-0.2
3,122,968	-				+0.6
3,123,043	-				+3.0
3,123,063	+		CCNA_02967	0.12	-1.1
3,123,068	+		CCNA_02967	0.12	-0.0
3,123,068	+		CCNA_02967	0.12	+1.5
3,123,076	-		CCNA_02967	0.12	-1.7
3,123,076	-		CCNA_02967	0.12	+0.6
3,123,107	+		CCNA_02967	0.14	+0.2
3,123,107	+		CCNA_02967	0.14	+0.3
3,123,107	+		CCNA_02967	0.14	+0.6
3,123,107	+		CCNA_02967	0.14	-1.1
3,123,107	+		CCNA_02967	0.14	+1.0
3,123,125	+		CCNA_02967	0.14	-0.4
3,123,156	-		CCNA_02967	0.16	+1.0
3,123,177	+		CCNA_02967	0.17	-0.5
3,123,185	-		CCNA_02967	0.17	+0.6