Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02894

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,041,247	+		CCNA_02893	0.52	+0.7
3,041,258	+		CCNA_02893	0.52	+0.5
3,041,265	+		CCNA_02893	0.53	+0.7
3,041,329	-		CCNA_02893	0.56	-1.7
3,041,345	+		CCNA_02893	0.57	+2.0
3,041,374	-		CCNA_02893	0.59	+1.5
3,041,396	+		CCNA_02893	0.60	-0.5
3,041,404	-		CCNA_02893	0.61	-0.5
3,041,437	+		CCNA_02893	0.63	+3.0
3,041,439	-		CCNA_02893	0.63	+0.0
3,041,579	+		CCNA_02893	0.71	+1.0
3,041,579	+		CCNA_02893	0.71	-0.7
3,041,612	+		CCNA_02893	0.73	+1.5
3,041,612	+		CCNA_02893	0.73	+3.0
3,041,620	-		CCNA_02893	0.74	+1.5
3,041,620	-		CCNA_02893	0.74	-0.9
3,041,670	-		CCNA_02893	0.77	-0.7
3,041,672	+		CCNA_02893	0.77	-1.7
3,041,683	+		CCNA_02893	0.77	+0.7
3,041,715	-		CCNA_02893	0.79	+1.0
3,041,715	-		CCNA_02893	0.79	+0.5
3,041,730	-		CCNA_02893	0.80	+2.0
3,041,761	+		CCNA_02893	0.82	-0.5
3,041,761	+		CCNA_02893	0.82	+2.0
3,041,784	-		CCNA_02893	0.83	-1.5
3,041,796	+		CCNA_02893	0.84	+0.9
3,041,804	-		CCNA_02893	0.85	-0.7
3,041,804	-		CCNA_02893	0.85	-0.7
3,041,814	-		CCNA_02893	0.85	+1.6
3,041,843	+		CCNA_02893	0.87	-0.8
3,041,907	-				-1.0
3,041,955	+				-0.4
3,041,955	+				+3.0
3,041,955	+				-1.4
3,041,958	-				+0.2
3,041,963	-				+0.5
3,041,963	-				+0.7
3,041,963	-				+0.7
3,041,963	-				+2.0
3,041,963	-				+1.0
3,041,963	-				+3.0
3,041,983	+				-0.4
3,041,991	-				+0.0
3,041,991	-				+2.5
3,042,011	+				+1.5
3,042,013	+				+1.0
3,042,028	+				+0.7
3,042,034	+				+0.5
3,042,048	+				+1.6
3,042,056	-				+4.0
3,042,056	-				+2.0
3,042,056	-				-0.3
3,042,158	-				-0.5
3,042,158	-				+0.7
3,042,236	-				+3.4
3,042,249	+				+1.5
3,042,251	+				+3.0
3,042,251	+				+1.5
3,042,257	-				-0.3
3,042,278	-				+3.0
3,042,282	+				+1.0
3,042,282	+				+3.0
3,042,282	+				+2.2
3,042,282	+				-0.3
3,042,290	-				+0.0
3,042,290	-				-0.5
3,042,290	-				-1.0
3,042,290	-				-0.4
3,042,290	-				-0.4
3,042,300	-				+0.5
3,042,310	-				+0.0
3,042,310	-				-1.1
3,042,381	+		CCNA_02894	0.13	+1.0
3,042,389	-		CCNA_02894	0.13	-1.7
3,042,429	+		CCNA_02894	0.17	+0.5
3,042,432	-		CCNA_02894	0.17	+0.2
3,042,432	-		CCNA_02894	0.17	+1.0
3,042,435	+		CCNA_02894	0.17	-1.6
3,042,443	-		CCNA_02894	0.18	-0.8
3,042,454	+		CCNA_02894	0.19	-0.1
3,042,469	+		CCNA_02894	0.20	-0.3
3,042,523	+		CCNA_02894	0.25	+1.0
3,042,524	+		CCNA_02894	0.25	+3.0
3,042,531	-		CCNA_02894	0.26	+1.5
3,042,531	-		CCNA_02894	0.26	-0.4
3,042,537	-		CCNA_02894	0.26	-0.9
3,042,538	-		CCNA_02894	0.26	-0.8
3,042,554	-		CCNA_02894	0.28	-0.7
3,042,569	-		CCNA_02894	0.29	-0.9
3,042,626	+		CCNA_02894	0.34	+1.5
3,042,664	+		CCNA_02894	0.37	-0.5
3,042,672	-		CCNA_02894	0.38	-2.0
3,042,750	-		CCNA_02894	0.45	+2.0
3,042,752	+		CCNA_02894	0.45	+0.5
3,042,806	-		CCNA_02894	0.49	+3.0
3,042,826	+		CCNA_02894	0.51	+0.2
3,042,858	-		CCNA_02894	0.54	-2.0
3,042,887	-		CCNA_02894	0.56	+1.0
3,042,913	+		CCNA_02894	0.59	+0.0
3,042,915	+		CCNA_02894	0.59	-0.9
3,042,915	+		CCNA_02894	0.59	+3.0
3,042,915	+		CCNA_02894	0.59	+0.5
3,042,915	+		CCNA_02894	0.59	-1.0
3,042,915	+		CCNA_02894	0.59	+0.7
3,042,923	-		CCNA_02894	0.60	+0.5
3,042,923	-		CCNA_02894	0.60	-0.1
3,042,958	-		CCNA_02894	0.63	+0.9
3,042,979	+		CCNA_02894	0.64	-1.1
3,042,979	+		CCNA_02894	0.64	-1.0
3,042,987	-		CCNA_02894	0.65	-1.0
3,042,998	+		CCNA_02894	0.66	+2.0
3,043,021	+		CCNA_02894	0.68	+0.7
3,043,021	+		CCNA_02894	0.68	+1.6
3,043,024	-		CCNA_02894	0.68	-1.3
3,043,029	-		CCNA_02894	0.69	+0.2
3,043,031	+		CCNA_02894	0.69	-1.6
3,043,036	+		CCNA_02894	0.69	+0.0
3,043,044	+		CCNA_02894	0.70	-0.1
3,043,044	+		CCNA_02894	0.70	-1.0
3,043,044	-		CCNA_02894	0.70	+0.7
3,043,052	-		CCNA_02894	0.71	+1.5
3,043,094	+				+1.5
3,043,096	+		CCNA_02894	0.75	-1.0
3,043,104	-		CCNA_02894	0.75	-0.7
3,043,153	-		CCNA_02894	0.79	+1.0
3,043,155	-		CCNA_02894	0.80	+0.2
3,043,166	+		CCNA_02894	0.81	-0.1
3,043,192	+		CCNA_02894	0.83	+0.5
3,043,210	-		CCNA_02894	0.84	+1.0
3,043,217	+		CCNA_02894	0.85	-1.3
3,043,225	-		CCNA_02894	0.86	+0.0
3,043,244	-		CCNA_02894	0.87	-0.3
3,043,249	-		CCNA_02894	0.88	+1.0
3,043,254	+		CCNA_02894	0.88	+0.0
3,043,254	+		CCNA_02894	0.88	+0.5
3,043,260	+		CCNA_02894	0.89	-1.4
3,043,268	-		CCNA_02894	0.89	-0.1
3,043,268	-		CCNA_02894	0.89	+0.0
3,043,334	+				-0.4
3,043,357	+				-1.0
3,043,360	-				-0.8
3,043,365	-				+0.1
3,043,427	+				+1.2
3,043,432	+				-1.0
3,043,435	-				+0.5
3,043,435	-				-0.5
3,043,451	-				+0.8
3,043,461	+				+2.3
3,043,522	+				-1.5
3,043,552	+				+0.0
3,043,560	+				+1.0
3,043,560	+				+0.7
3,043,568	-				+0.9
3,043,596	+				+1.5
3,043,604	-				+0.5
3,043,606	+				-1.7
3,043,613	+				+1.0
3,043,613	+				+1.5
3,043,627	-				+0.0
3,043,661	-				-1.1
3,043,692	+				+3.3
3,043,692	+				+2.9
3,043,692	+				+3.9
3,043,692	+				+2.4
3,043,694	+				+0.2
3,043,794	+				+2.0
3,043,815	+				+1.0
3,043,815	+				-1.3
3,043,865	+		CCNA_02895	0.10	-1.5
3,043,886	+		CCNA_02895	0.11	-1.0
3,043,899	-		CCNA_02895	0.11	+1.5
3,043,918	+		CCNA_02895	0.12	+0.7
3,043,926	-		CCNA_02895	0.12	-0.3
3,043,926	-		CCNA_02895	0.12	-0.4
3,043,929	+		CCNA_02895	0.12	+3.0
3,043,943	+		CCNA_02895	0.13	+1.0
3,043,970	-		CCNA_02895	0.14	+1.2
3,044,008	-		CCNA_02895	0.15	-0.8
3,044,024	+		CCNA_02895	0.15	-0.8
3,044,032	+		CCNA_02895	0.15	-0.1
3,044,057	+		CCNA_02895	0.16	+0.5
3,044,088	+		CCNA_02895	0.17	+1.5
3,044,088	+		CCNA_02895	0.17	+0.2
3,044,108	-		CCNA_02895	0.18	+0.2
3,044,108	-		CCNA_02895	0.18	+1.0
3,044,137	+		CCNA_02895	0.19	-0.1
3,044,140	+		CCNA_02895	0.19	+0.7
3,044,162	+		CCNA_02895	0.19	-0.0
3,044,172	+		CCNA_02895	0.20	-0.8
3,044,172	+		CCNA_02895	0.20	+1.0
3,044,175	-		CCNA_02895	0.20	-0.1
3,044,180	-		CCNA_02895	0.20	+0.5
3,044,180	-		CCNA_02895	0.20	-0.7
3,044,185	-		CCNA_02895	0.20	-0.7
3,044,186	-		CCNA_02895	0.20	+0.9
3,044,262	-		CCNA_02895	0.23	+0.0
3,044,267	-		CCNA_02895	0.23	-0.3
3,044,300	-		CCNA_02895	0.24	-0.3
3,044,335	+		CCNA_02895	0.25	+0.7
3,044,335	+		CCNA_02895	0.25	+0.2
3,044,335	+		CCNA_02895	0.25	+0.0
3,044,343	-		CCNA_02895	0.25	+0.5
3,044,379	+		CCNA_02895	0.26	+1.0
3,044,380	+		CCNA_02895	0.26	-1.0
3,044,387	-		CCNA_02895	0.26	-1.3
3,044,387	-		CCNA_02895	0.26	-0.4
3,044,389	+		CCNA_02895	0.27	+0.4