Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02685

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,837,485	+				-0.4
2,837,488	-				-0.7
2,837,510	-				-1.0
2,837,513	+				-0.4
2,837,547	+		CCNA_02684	0.11	+1.8
2,837,552	+		CCNA_02684	0.11	+2.2
2,837,562	+		CCNA_02684	0.12	+0.5
2,837,562	+		CCNA_02684	0.12	-0.2
2,837,562	+		CCNA_02684	0.12	+0.8
2,837,570	-		CCNA_02684	0.13	-0.8
2,837,570	-		CCNA_02684	0.13	+1.8
2,837,570	-		CCNA_02684	0.13	+0.8
2,837,570	-		CCNA_02684	0.13	-1.5
2,837,570	-		CCNA_02684	0.13	-1.1
2,837,582	-		CCNA_02684	0.14	-0.2
2,837,625	+		CCNA_02684	0.18	-0.4
2,837,630	+		CCNA_02684	0.19	-1.0
2,837,630	+		CCNA_02684	0.19	-0.7
2,837,632	+		CCNA_02684	0.19	-0.2
2,837,632	+		CCNA_02684	0.19	-0.2
2,837,632	+		CCNA_02684	0.19	+1.8
2,837,632	+		CCNA_02684	0.19	+2.8
2,837,632	+		CCNA_02684	0.19	+1.2
2,837,638	-		CCNA_02684	0.20	-0.4
2,837,640	-		CCNA_02684	0.20	-1.2
2,837,640	-		CCNA_02684	0.20	+0.8
2,837,640	-		CCNA_02684	0.20	+0.5
2,837,664	+		CCNA_02684	0.22	+2.0
2,837,676	+		CCNA_02684	0.23	+0.8
2,837,676	+		CCNA_02684	0.23	-0.0
2,837,676	+		CCNA_02684	0.23	-0.2
2,837,684	-		CCNA_02684	0.24	+2.0
2,837,723	+		CCNA_02684	0.28	+2.8
2,837,729	+		CCNA_02684	0.28	-1.0
2,837,731	-				+2.8
2,837,769	+		CCNA_02684	0.32	-0.4
2,837,769	+		CCNA_02684	0.32	-0.4
2,837,777	-		CCNA_02684	0.33	-0.4
2,837,777	-		CCNA_02684	0.33	+0.2
2,837,777	-		CCNA_02684	0.33	-0.5
2,837,809	-		CCNA_02684	0.36	+0.2
2,837,833	-		CCNA_02684	0.38	+0.5
2,837,933	+		CCNA_02684	0.48	+0.8
2,837,960	-		CCNA_02684	0.50	-0.8
2,837,971	-		CCNA_02684	0.52	-0.7
2,838,000	+		CCNA_02684	0.54	-0.4
2,838,027	-		CCNA_02684	0.57	-0.0
2,838,036	+		CCNA_02684	0.58	-1.2
2,838,044	-		CCNA_02684	0.59	+2.8
2,838,063	-		CCNA_02684	0.60	+0.8
2,838,091	+		CCNA_02684	0.63	-0.2
2,838,150	+		CCNA_02684	0.69	+1.2
2,838,158	-		CCNA_02684	0.69	+2.8
2,838,187	-		CCNA_02684	0.72	+0.2
2,838,192	-		CCNA_02684	0.73	-1.7
2,838,208	-		CCNA_02684	0.74	-0.0
2,838,213	-		CCNA_02684	0.75	+0.2
2,838,225	+		CCNA_02684	0.76	-0.0
2,838,233	-		CCNA_02684	0.77	-0.4
2,838,273	-		CCNA_02684	0.80	+1.2
2,838,312	+		CCNA_02684	0.84	+1.2
2,838,329	+		CCNA_02684	0.86	+1.8
2,838,329	+		CCNA_02684	0.86	+0.2
2,838,337	-		CCNA_02684	0.87	+0.8
2,838,369	+		CCNA_02684	0.90	-0.4
2,838,377	-				-1.2
2,838,388	+				-0.2
2,838,417	+				-0.2
2,838,427	-				-0.5
2,838,466	-				-1.2
2,838,466	-				-0.2
2,838,514	-		CCNA_02685	0.10	+0.8
2,838,531	+		CCNA_02685	0.14	+0.5
2,838,558	+		CCNA_02685	0.21	-1.1
2,838,629	-		CCNA_02685	0.38	+0.8
2,838,666	+		CCNA_02685	0.47	-0.4
2,838,674	-		CCNA_02685	0.49	-0.5
2,838,674	-		CCNA_02685	0.49	-0.2
2,838,684	-		CCNA_02685	0.52	+0.5
2,838,741	+		CCNA_02685	0.66	-0.4
2,838,741	+		CCNA_02685	0.66	-0.7
2,838,741	+		CCNA_02685	0.66	-1.1
2,838,741	+		CCNA_02685	0.66	-0.5
2,838,741	+		CCNA_02685	0.66	-1.1
2,838,741	+		CCNA_02685	0.66	-1.5
2,838,749	-		CCNA_02685	0.68	-1.3
2,838,749	-		CCNA_02685	0.68	-0.0
2,838,761	-		CCNA_02685	0.71	+2.8
2,838,819	-		CCNA_02685	0.85	+0.8
2,838,919	+				-0.7
2,838,919	+				-0.4
2,838,936	+				+1.8
2,838,949	-				+0.2
2,839,110	-				+0.8
2,839,110	-				+2.8
2,839,116	+				+1.2
2,839,116	+				+0.5
2,839,177	+				-0.0
2,839,177	+				-0.0
2,839,177	+				+0.7
2,839,177	+				-0.7
2,839,177	+				+1.8
2,839,177	+				-1.1
2,839,177	+				-1.8
2,839,177	+				-0.8
2,839,191	+		CCNA_02686	0.11	+1.2
2,839,204	+		CCNA_02686	0.12	-0.8
2,839,210	+		CCNA_02686	0.12	-0.9
2,839,253	+		CCNA_02686	0.15	+0.5
2,839,285	+		CCNA_02686	0.18	-1.9
2,839,285	-		CCNA_02686	0.18	-1.0
2,839,293	-		CCNA_02686	0.19	+0.8
2,839,293	-		CCNA_02686	0.19	-0.0
2,839,303	+		CCNA_02686	0.19	+0.5
2,839,303	+		CCNA_02686	0.19	-0.6
2,839,311	-		CCNA_02686	0.20	-2.4
2,839,311	-		CCNA_02686	0.20	-0.0
2,839,311	-		CCNA_02686	0.20	+2.8
2,839,323	-		CCNA_02686	0.21	-0.4
2,839,350	-		CCNA_02686	0.23	-1.0
2,839,369	-		CCNA_02686	0.25	-1.3
2,839,371	+		CCNA_02686	0.25	+1.6
2,839,379	-		CCNA_02686	0.25	+0.5
2,839,383	+		CCNA_02686	0.26	+0.4
2,839,407	-		CCNA_02686	0.27	+0.8
2,839,426	-		CCNA_02686	0.29	-0.9
2,839,485	+		CCNA_02686	0.34	+1.0
2,839,493	+		CCNA_02686	0.34	-0.8
2,839,493	+		CCNA_02686	0.34	-0.2
2,839,500	-		CCNA_02686	0.35	-2.7
2,839,513	+		CCNA_02686	0.36	+0.9
2,839,522	-		CCNA_02686	0.36	+1.7
2,839,532	-		CCNA_02686	0.37	+0.5
2,839,609	-		CCNA_02686	0.43	-0.0
2,839,624	+		CCNA_02686	0.44	+0.3
2,839,661	+		CCNA_02686	0.47	+1.2
2,839,697	+		CCNA_02686	0.50	-1.4
2,839,707	-		CCNA_02686	0.51	+1.8
2,839,743	+		CCNA_02686	0.54	-1.5
2,839,755	+		CCNA_02686	0.55	+2.1
2,839,776	+		CCNA_02686	0.56	-1.4
2,839,796	+		CCNA_02686	0.58	-1.3
2,839,845	+		CCNA_02686	0.62	-1.0
2,839,871	-		CCNA_02686	0.64	+2.2