Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02493

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,639,362	-		CCNA_02491	0.55	+0.6
2,639,393	+		CCNA_02491	0.59	-0.4
2,639,465	-		CCNA_02491	0.69	+0.2
2,639,484	+		CCNA_02491	0.72	+0.0
2,639,492	-		CCNA_02491	0.73	-0.5
2,639,492	-		CCNA_02491	0.73	+0.8
2,639,562	+		CCNA_02491	0.83	-0.4
2,639,562	+		CCNA_02491	0.83	+0.0
2,639,597	+		CCNA_02491	0.88	-1.6
2,639,600	+		CCNA_02491	0.88	-0.3
2,639,605	-		CCNA_02491	0.89	-0.2
2,639,605	-		CCNA_02491	0.89	-0.4
2,639,608	-		CCNA_02491	0.90	-0.9
2,639,612	+				-1.6
2,639,612	+				-1.2
2,639,634	-				-1.0
2,639,639	-				+0.8
2,639,641	+				+1.1
2,639,645	+				+0.8
2,639,653	-				-1.1
2,639,668	+				+2.8
2,639,698	-				+1.2
2,639,725	-				-0.2
2,639,761	+		CCNA_02492	0.13	-0.4
2,639,776	-		CCNA_02492	0.16	+0.8
2,639,786	-		CCNA_02492	0.17	+0.8
2,639,786	-		CCNA_02492	0.17	+0.0
2,639,795	-		CCNA_02492	0.19	+0.5
2,639,800	-		CCNA_02492	0.19	-0.4
2,639,800	-		CCNA_02492	0.19	+0.2
2,639,800	-		CCNA_02492	0.19	-1.4
2,639,836	-		CCNA_02492	0.25	+4.4
2,639,838	+		CCNA_02492	0.25	+0.5
2,639,838	+		CCNA_02492	0.25	+0.8
2,639,846	-		CCNA_02492	0.26	+1.2
2,639,846	-		CCNA_02492	0.26	+1.8
2,639,853	-		CCNA_02492	0.27	+0.8
2,639,857	+		CCNA_02492	0.28	-0.9
2,639,857	+		CCNA_02492	0.28	+0.2
2,639,857	+		CCNA_02492	0.28	-0.2
2,639,857	+		CCNA_02492	0.28	-1.9
2,639,857	+		CCNA_02492	0.28	+0.5
2,639,857	+		CCNA_02492	0.28	-0.8
2,639,857	+		CCNA_02492	0.28	+0.0
2,639,865	-		CCNA_02492	0.29	-1.8
2,639,865	-		CCNA_02492	0.29	+1.2
2,639,888	-		CCNA_02492	0.33	+1.0
2,639,888	-		CCNA_02492	0.33	+1.2
2,639,920	+		CCNA_02492	0.38	-1.7
2,639,928	-		CCNA_02492	0.39	+0.0
2,639,930	-		CCNA_02492	0.39	+0.0
2,639,940	+		CCNA_02492	0.41	+1.2
2,640,002	+		CCNA_02492	0.50	+2.4
2,640,010	-		CCNA_02492	0.52	+1.8
2,640,010	-		CCNA_02492	0.52	-0.1
2,640,010	-		CCNA_02492	0.52	-1.9
2,640,010	-		CCNA_02492	0.52	-1.2
2,640,010	-		CCNA_02492	0.52	+0.2
2,640,025	+		CCNA_02492	0.54	+1.2
2,640,025	+		CCNA_02492	0.54	-0.7
2,640,165	+		CCNA_02492	0.75	+1.8
2,640,173	-		CCNA_02492	0.77	-0.4
2,640,224	-		CCNA_02492	0.84	+0.8
2,640,233	+		CCNA_02492	0.86	+0.8
2,640,241	-		CCNA_02492	0.87	-0.4
2,640,241	-		CCNA_02492	0.87	-0.5
2,640,267	-				-0.4
2,640,273	-				+0.2
2,640,318	+				+1.8
2,640,349	-				-1.0
2,640,349	-				+2.8
2,640,349	-				-0.2
2,640,349	-				+1.8
2,640,349	-				+0.8
2,640,349	-				+0.0
2,640,349	-				+0.5
2,640,404	+				-0.9
2,640,410	+				+1.8
2,640,410	+				-0.2
2,640,425	+				+0.2
2,640,425	+				+0.8
2,640,425	+				-0.2
2,640,425	+				+0.0
2,640,433	-				+0.6
2,640,433	-				-1.8
2,640,433	-				+1.8
2,640,451	-				+1.8
2,640,491	+		CCNA_02493	0.13	-1.4
2,640,521	-		CCNA_02493	0.15	+1.8
2,640,530	+		CCNA_02493	0.16	+0.8
2,640,538	-		CCNA_02493	0.17	+0.5
2,640,559	+		CCNA_02493	0.19	+0.0
2,640,562	-		CCNA_02493	0.19	-1.2
2,640,632	+		CCNA_02493	0.25	+1.8
2,640,632	+		CCNA_02493	0.25	-1.1
2,640,651	+		CCNA_02493	0.27	+0.8
2,640,651	+		CCNA_02493	0.27	-0.5
2,640,651	+		CCNA_02493	0.27	-1.6
2,640,659	-		CCNA_02493	0.27	+0.5
2,640,680	-		CCNA_02493	0.29	+0.2
2,640,686	+		CCNA_02493	0.30	+0.2
2,640,693	-		CCNA_02493	0.30	-0.2
2,640,704	-		CCNA_02493	0.31	-1.3
2,640,720	-		CCNA_02493	0.33	-1.0
2,640,771	+		CCNA_02493	0.37	-0.9
2,640,775	-		CCNA_02493	0.38	-2.3
2,640,779	-		CCNA_02493	0.38	+0.2
2,640,779	-		CCNA_02493	0.38	-0.9
2,640,781	+		CCNA_02493	0.38	+0.8
2,640,781	-		CCNA_02493	0.38	-0.6
2,640,803	+		CCNA_02493	0.40	+0.5
2,640,811	-		CCNA_02493	0.41	-1.7
2,640,816	+		CCNA_02493	0.41	-2.7
2,640,816	-		CCNA_02493	0.41	-0.2
2,640,860	+		CCNA_02493	0.45	-3.0
2,640,873	-		CCNA_02493	0.46	-0.6
2,640,891	-		CCNA_02493	0.48	+0.0
2,640,945	-		CCNA_02493	0.52	-1.2
2,640,986	-		CCNA_02493	0.56	-0.4
2,641,025	+		CCNA_02493	0.59	+1.2
2,641,025	+		CCNA_02493	0.59	+0.0
2,641,026	+		CCNA_02493	0.59	-0.9
2,641,033	-		CCNA_02493	0.60	-0.8
2,641,033	-		CCNA_02493	0.60	+0.6
2,641,041	+		CCNA_02493	0.61	-0.6
2,641,041	+		CCNA_02493	0.61	+0.2
2,641,057	+		CCNA_02493	0.62	+1.2
2,641,117	+		CCNA_02493	0.67	-0.2
2,641,125	-		CCNA_02493	0.68	-0.5
2,641,139	+		CCNA_02493	0.69	+1.2
2,641,147	-		CCNA_02493	0.70	-1.8
2,641,257	+		CCNA_02493	0.79	+1.2
2,641,265	-		CCNA_02493	0.80	+0.5
2,641,297	+		CCNA_02493	0.83	-0.6
2,641,302	+		CCNA_02493	0.83	+0.0
2,641,302	+		CCNA_02493	0.83	-0.2
2,641,302	+		CCNA_02493	0.83	+0.2
2,641,315	-		CCNA_02493	0.85	+0.5
2,641,328	-		CCNA_02493	0.86	-0.6
2,641,329	-		CCNA_02493	0.86	+0.2
2,641,330	+		CCNA_02493	0.86	-0.9
2,641,372	-		CCNA_02493	0.89	-0.4
2,641,379	-				-1.4
2,641,386	-				-0.2
2,641,397	+				+0.0
2,641,405	-				+1.4
2,641,420	+				-0.1
2,641,420	+				+0.5
2,641,437	+				-0.4
2,641,443	-				-0.2
2,641,458	+				+0.2
2,641,474	-				+0.2
2,641,476	+				-1.1
2,641,484	-				+1.2
2,641,497	-				+2.8
2,641,554	+				-0.2
2,641,607	-				-1.2
2,641,607	-				-3.4
2,641,625	+		CCNA_02494	0.11	+1.4
2,641,705	-		CCNA_02494	0.18	-1.0
2,641,720	+		CCNA_02494	0.19	+1.0
2,641,798	+		CCNA_02494	0.26	+0.8
2,641,806	-		CCNA_02494	0.27	+1.2
2,641,842	+		CCNA_02494	0.30	-0.8
2,641,844	-		CCNA_02494	0.30	+0.5
2,641,850	-		CCNA_02494	0.30	+0.8
2,641,850	-		CCNA_02494	0.30	+1.2
2,641,850	-		CCNA_02494	0.30	-0.2
2,641,858	+		CCNA_02494	0.31	-1.4
2,641,863	+		CCNA_02494	0.31	+0.0
2,641,891	+		CCNA_02494	0.34	-1.3
2,641,892	-		CCNA_02494	0.34	+0.0
2,641,899	-		CCNA_02494	0.34	+0.2
2,641,899	-		CCNA_02494	0.34	+0.8
2,641,918	+		CCNA_02494	0.36	+1.2
2,641,941	-		CCNA_02494	0.38	+1.2
2,641,962	-		CCNA_02494	0.40	+1.2
2,641,967	-		CCNA_02494	0.40	-1.8
2,641,982	-		CCNA_02494	0.41	+1.8
2,641,982	-		CCNA_02494	0.41	+0.8
2,641,991	-		CCNA_02494	0.42	-1.1
2,642,000	+		CCNA_02494	0.43	+1.2
2,642,008	-		CCNA_02494	0.44	+0.2
2,642,063	-		CCNA_02494	0.48	-0.8
2,642,075	-		CCNA_02494	0.49	+2.8
2,642,099	+		CCNA_02494	0.51	-1.3
2,642,122	-		CCNA_02494	0.53	+0.6
2,642,169	-		CCNA_02494	0.57	+2.8
2,642,172	+		CCNA_02494	0.58	-0.4
2,642,206	+		CCNA_02494	0.60	+0.2
2,642,214	-		CCNA_02494	0.61	+1.2
2,642,216	+		CCNA_02494	0.61	-0.2
2,642,216	+		CCNA_02494	0.61	-0.2
2,642,216	+		CCNA_02494	0.61	-0.4
2,642,216	+		CCNA_02494	0.61	+0.4
2,642,224	-		CCNA_02494	0.62	+0.9
2,642,224	-		CCNA_02494	0.62	+0.2
2,642,238	+		CCNA_02494	0.63	-1.0
2,642,238	+		CCNA_02494	0.63	+1.8
2,642,241	-		CCNA_02494	0.63	-1.3
2,642,269	+		CCNA_02494	0.66	-0.1
2,642,277	-		CCNA_02494	0.66	+1.2
2,642,279	+		CCNA_02494	0.67	+1.5
2,642,280	-		CCNA_02494	0.67	+0.8
2,642,295	+		CCNA_02494	0.68	-1.2
2,642,295	+		CCNA_02494	0.68	+3.2
2,642,303	-		CCNA_02494	0.69	-1.0
2,642,318	-		CCNA_02494	0.70	-1.6
2,642,318	-				+1.2
2,642,318	-		CCNA_02494	0.70	+1.8
2,642,318	-		CCNA_02494	0.70	-0.8
2,642,323	+		CCNA_02494	0.70	+0.2
2,642,339	+		CCNA_02494	0.72	+1.4
2,642,341	+		CCNA_02494	0.72	+0.0
2,642,341	+		CCNA_02494	0.72	+1.2
2,642,341	+		CCNA_02494	0.72	+2.8
2,642,341	+		CCNA_02494	0.72	+0.0
2,642,349	-		CCNA_02494	0.73	-1.1
2,642,349	-		CCNA_02494	0.73	-2.0
2,642,349	-		CCNA_02494	0.73	-0.4
2,642,349	-		CCNA_02494	0.73	+0.8
2,642,386	+		CCNA_02494	0.76	+0.2
2,642,441	+		CCNA_02494	0.80	-0.6
2,642,445	-		CCNA_02494	0.81	+0.8
2,642,452	+		CCNA_02494	0.81	+0.2
2,642,452	+		CCNA_02494	0.81	+0.8
2,642,452	+		CCNA_02494	0.81	-0.8