Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02349

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,487,448	+		CCNA_02347	0.78	+1.2
2,487,532	+		CCNA_02347	0.84	+2.1
2,487,609	+		CCNA_02347	0.89	+2.7
2,487,623	+		CCNA_02347	0.90	+2.3
2,487,628	+				+2.4
2,487,662	-				+1.1
2,487,687	+				+1.7
2,487,723	+				+3.4
2,487,797	+				+2.8
2,487,818	-				+0.8
2,487,864	-				-0.8
2,487,871	-				+1.7
2,487,895	-				-0.5
2,487,904	+		CCNA_02348	0.11	+1.3
2,487,912	-		CCNA_02348	0.13	-0.2
2,487,953	-		CCNA_02348	0.23	+0.3
2,487,968	-		CCNA_02348	0.26	-1.0
2,487,984	-		CCNA_02348	0.30	+1.7
2,487,986	+		CCNA_02348	0.30	-0.7
2,488,009	-		CCNA_02348	0.35	+1.7
2,488,041	+		CCNA_02348	0.43	-0.5
2,488,049	-		CCNA_02348	0.45	-0.3
2,488,049	-		CCNA_02348	0.45	+0.7
2,488,049	-		CCNA_02348	0.45	-0.9
2,488,116	-		CCNA_02348	0.60	-0.3
2,488,158	+		CCNA_02348	0.69	+0.7
2,488,166	-		CCNA_02348	0.71	+3.7
2,488,187	+		CCNA_02348	0.76	-1.7
2,488,202	-		CCNA_02348	0.79	+0.1
2,488,204	+		CCNA_02348	0.80	+2.2
2,488,257	-				-0.5
2,488,291	+				+2.7
2,488,294	-				-0.3
2,488,296	+				-0.9
2,488,299	-				+1.1
2,488,299	-				-0.5
2,488,309	-				+0.1
2,488,339	-				-0.6
2,488,358	-				+0.7
2,488,368	-				+0.3
2,488,373	+				-2.3
2,488,397	-				-1.2
2,488,403	+				-1.0
2,488,403	+				-1.5
2,488,419	-				+0.1
2,488,446	-				-1.2
2,488,583	+		CCNA_02349	0.18	+0.9
2,488,583	+		CCNA_02349	0.18	-1.7
2,488,583	+		CCNA_02349	0.18	-2.2
2,488,591	-		CCNA_02349	0.18	+0.3
2,488,591	-		CCNA_02349	0.18	+0.3
2,488,591	-		CCNA_02349	0.18	+1.7
2,488,591	-		CCNA_02349	0.18	+0.3
2,488,591	-		CCNA_02349	0.18	+1.9
2,488,606	-		CCNA_02349	0.20	+1.7
2,488,606	-		CCNA_02349	0.20	+1.9
2,488,606	-		CCNA_02349	0.20	+0.0
2,488,621	-		CCNA_02349	0.22	+1.1
2,488,622	-		CCNA_02349	0.22	+0.3
2,488,627	-		CCNA_02349	0.22	-1.1
2,488,668	+		CCNA_02349	0.27	-2.8
2,488,676	-		CCNA_02349	0.28	-0.2
2,488,676	-		CCNA_02349	0.28	-0.2
2,488,712	+		CCNA_02349	0.32	-1.2
2,488,740	+		CCNA_02349	0.35	+0.5
2,488,751	-		CCNA_02349	0.36	+0.1
2,488,788	+		CCNA_02349	0.40	+1.7
2,488,796	-		CCNA_02349	0.41	+1.1
2,488,827	-		CCNA_02349	0.45	+1.1
2,488,905	-		CCNA_02349	0.53	+0.7
2,488,918	+		CCNA_02349	0.55	+0.3
2,488,930	-		CCNA_02349	0.56	-2.3
2,488,999	+		CCNA_02349	0.64	-0.9
2,489,009	-		CCNA_02349	0.65	+1.1
2,489,009	-		CCNA_02349	0.65	-0.1
2,489,024	+		CCNA_02349	0.67	+0.7
2,489,067	+		CCNA_02349	0.71	+1.2
2,489,087	-		CCNA_02349	0.74	-1.6
2,489,177	+		CCNA_02349	0.84	+0.3
2,489,177	+		CCNA_02349	0.84	+0.1
2,489,177	+		CCNA_02349	0.84	+0.4
2,489,177	+		CCNA_02349	0.84	+0.3
2,489,177	+		CCNA_02349	0.84	-1.5
2,489,185	-		CCNA_02349	0.84	+0.4
2,489,211	+		CCNA_02349	0.87	+0.1
2,489,225	-		CCNA_02349	0.89	-1.5
2,489,238	+				-1.2
2,489,257	+				+0.2
2,489,279	-				-0.7
2,489,314	-				+0.1
2,489,316	-				-1.2
2,489,318	+				-0.5
2,489,318	+				+0.4
2,489,318	+				-0.4
2,489,318	+				+0.5
2,489,318	+				-0.6
2,489,318	+				+0.7
2,489,318	+				+3.2
2,489,318	+				-2.9
2,489,318	+				+0.8
2,489,326	-				+0.3
2,489,326	-				+0.1
2,489,326	-				-0.7
2,489,326	-				-0.5
2,489,326	-				+0.3
2,489,326	-				-1.6
2,489,326	-				-1.0
2,489,326	-				+0.4
2,489,326	-				-0.5
2,489,336	-				+0.1
2,489,350	-				-0.3
2,489,423	-		CCNA_02350	0.14	-0.0
2,489,482	-		CCNA_02350	0.29	-0.5
2,489,492	-		CCNA_02350	0.32	+2.7
2,489,513	-		CCNA_02350	0.37	+2.7
2,489,541	-		CCNA_02350	0.44	-2.1
2,489,570	+		CCNA_02350	0.51	-0.9
2,489,622	+		CCNA_02350	0.64	+0.6
2,489,630	-		CCNA_02350	0.66	+0.3
2,489,645	+		CCNA_02350	0.70	+0.1
2,489,653	-		CCNA_02350	0.72	+2.7
2,489,663	+		CCNA_02350	0.74	+0.2
2,489,720	-		CCNA_02350	0.89	-1.3
2,489,723	+		CCNA_02350	0.89	+1.0
2,489,731	-				-0.5
2,489,738	-				-1.1
2,489,783	-				-0.5
2,489,823	+				+1.7
2,489,827	-				-1.4
2,489,831	-				-0.7
2,489,861	+				-0.1
2,489,894	-				+1.2
2,490,037	+		CCNA_02351	0.16	+1.2
2,490,056	-		CCNA_02351	0.19	+0.7
2,490,111	-		CCNA_02351	0.28	+0.3
2,490,175	-		CCNA_02351	0.38	+0.0
2,490,203	+		CCNA_02351	0.42	-0.2
2,490,214	+		CCNA_02351	0.44	-1.9
2,490,232	-		CCNA_02351	0.47	-0.2
2,490,232	-		CCNA_02351	0.47	+1.7
2,490,250	+		CCNA_02351	0.50	-1.8
2,490,293	-		CCNA_02351	0.57	+2.2
2,490,317	+		CCNA_02351	0.60	+1.7