Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02338

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,477,217	-		CCNA_02336	0.42	-0.1
2,477,258	-		CCNA_02336	0.46	-0.2
2,477,378	+		CCNA_02336	0.58	+0.6
2,477,379	+		CCNA_02336	0.58	-0.6
2,477,379	+		CCNA_02336	0.58	-2.0
2,477,429	+		CCNA_02336	0.63	-0.2
2,477,435	-		CCNA_02336	0.64	+1.6
2,477,437	-		CCNA_02336	0.64	+0.8
2,477,465	-		CCNA_02336	0.67	-0.6
2,477,506	+		CCNA_02336	0.71	-0.9
2,477,515	-		CCNA_02336	0.72	-0.6
2,477,540	+		CCNA_02336	0.75	+0.3
2,477,541	+		CCNA_02336	0.75	-0.3
2,477,541	+		CCNA_02336	0.75	+2.6
2,477,549	-		CCNA_02336	0.75	-0.2
2,477,551	+		CCNA_02336	0.76	+0.8
2,477,633	+		CCNA_02336	0.84	-1.6
2,477,640	+		CCNA_02336	0.85	+1.3
2,477,646	-		CCNA_02336	0.85	-0.1
2,477,648	+		CCNA_02336	0.86	-1.8
2,477,658	-		CCNA_02336	0.87	-0.5
2,477,658	-		CCNA_02336	0.87	-0.7
2,477,662	-		CCNA_02336	0.87	-1.1
2,477,697	-				+0.9
2,477,704	-				+1.2
2,477,774	-				+3.4
2,478,129	-				+0.0
2,478,171	+				+0.3
2,478,223	-				+0.3
2,478,223	-				+3.5
2,478,223	-				+2.3
2,478,237	+				-0.2
2,478,244	-				+1.8
2,478,245	-				+2.1
2,478,264	+		CCNA_02338	0.11	+0.0
2,478,269	+		CCNA_02338	0.12	-2.1
2,478,272	-		CCNA_02338	0.12	+1.2
2,478,272	-		CCNA_02338	0.12	+2.0
2,478,277	-		CCNA_02338	0.13	+2.8
2,478,277	-		CCNA_02338	0.13	+3.3
2,478,277	-		CCNA_02338	0.13	+2.2
2,478,277	-		CCNA_02338	0.13	+2.4
2,478,279	-		CCNA_02338	0.13	+1.4
2,478,323	+		CCNA_02338	0.20	-1.2
2,478,370	-		CCNA_02338	0.27	+3.1
2,478,393	+		CCNA_02338	0.30	-2.6
2,478,447	-		CCNA_02338	0.38	+2.1
2,478,447	-		CCNA_02338	0.38	+1.8
2,478,466	-		CCNA_02338	0.41	+1.8
2,478,466	-		CCNA_02338	0.41	+2.4
2,478,474	-		CCNA_02338	0.42	+1.9
2,478,495	+		CCNA_02338	0.45	+0.0
2,478,525	-		CCNA_02338	0.49	+1.1
2,478,550	-		CCNA_02338	0.53	+1.9
2,478,550	-		CCNA_02338	0.53	-1.0
2,478,550	-		CCNA_02338	0.53	+1.7
2,478,550	-		CCNA_02338	0.53	+1.1
2,478,562	-		CCNA_02338	0.55	+2.5
2,478,587	-		CCNA_02338	0.59	+1.4
2,478,591	+		CCNA_02338	0.59	+1.0
2,478,648	+		CCNA_02338	0.68	-0.4
2,478,684	+		CCNA_02338	0.73	+0.6
2,478,687	-		CCNA_02338	0.73	+0.8
2,478,712	+		CCNA_02338	0.77	-0.7
2,478,712	+		CCNA_02338	0.77	-1.7
2,478,720	-		CCNA_02338	0.78	+0.3
2,478,720	-		CCNA_02338	0.78	+2.2
2,478,720	-		CCNA_02338	0.78	+2.3
2,478,738	+		CCNA_02338	0.81	+0.3
2,478,781	-		CCNA_02338	0.87	+2.1
2,478,791	-		CCNA_02338	0.89	+1.3
2,478,826	-				+0.8
2,478,827	-				+0.5
2,478,851	+				+3.5
2,478,865	+				-2.3
2,478,929	+				-0.2
2,478,962	+		CCNA_02339	0.11	-0.2
2,478,972	-		CCNA_02339	0.12	+4.9
2,478,972	-		CCNA_02339	0.12	+3.7
2,478,987	+		CCNA_02339	0.14	+0.4
2,478,987	+		CCNA_02339	0.14	+1.4
2,478,988	-		CCNA_02339	0.14	+4.2
2,478,995	-		CCNA_02339	0.15	+3.8
2,478,996	-		CCNA_02339	0.15	+3.7
2,479,015	-		CCNA_02339	0.17	+4.2
2,479,017	-		CCNA_02339	0.17	+4.0
2,479,030	+		CCNA_02339	0.19	+0.1
2,479,038	-		CCNA_02339	0.19	+3.9
2,479,055	+		CCNA_02339	0.21	-1.2
2,479,055	+		CCNA_02339	0.21	-0.9
2,479,055	+		CCNA_02339	0.21	-1.1
2,479,063	-		CCNA_02339	0.22	+4.0
2,479,063	-		CCNA_02339	0.22	+3.8
2,479,087	+		CCNA_02339	0.25	-0.4
2,479,087	+		CCNA_02339	0.25	+0.6
2,479,095	-		CCNA_02339	0.26	+3.9
2,479,095	-		CCNA_02339	0.26	+3.9
2,479,095	-		CCNA_02339	0.26	+3.6
2,479,095	-		CCNA_02339	0.26	+4.5
2,479,095	-		CCNA_02339	0.26	+3.8
2,479,095	-		CCNA_02339	0.26	+3.6
2,479,108	-		CCNA_02339	0.27	+3.8
2,479,119	-		CCNA_02339	0.28	+3.6
2,479,134	-		CCNA_02339	0.30	+3.8
2,479,135	+		CCNA_02339	0.30	+1.6
2,479,188	-		CCNA_02339	0.36	+4.2
2,479,188	-		CCNA_02339	0.36	+4.1
2,479,188	-		CCNA_02339	0.36	+4.2
2,479,198	-		CCNA_02339	0.37	+4.5
2,479,198	-		CCNA_02339	0.37	+3.1
2,479,211	-		CCNA_02339	0.39	+3.4
2,479,211	-		CCNA_02339	0.39	+3.4
2,479,212	+		CCNA_02339	0.39	+0.3
2,479,212	-		CCNA_02339	0.39	+4.1
2,479,239	+		CCNA_02339	0.42	+0.6
2,479,247	-		CCNA_02339	0.43	+3.4
2,479,268	+		CCNA_02339	0.45	+0.7
2,479,333	+		CCNA_02339	0.52	+0.6
2,479,333	+		CCNA_02339	0.52	+0.0
2,479,404	-		CCNA_02339	0.60	+3.5
2,479,434	-		CCNA_02339	0.64	+4.1
2,479,447	-		CCNA_02339	0.65	+4.1
2,479,453	+		CCNA_02339	0.66	-1.5
2,479,479	+		CCNA_02339	0.69	+1.6
2,479,484	+		CCNA_02339	0.69	+2.6
2,479,487	-		CCNA_02339	0.69	+3.7
2,479,563	-		CCNA_02339	0.78	+4.1
2,479,638	-		CCNA_02339	0.86	+3.8
2,479,648	+		CCNA_02339	0.87	+0.0
2,479,648	+		CCNA_02339	0.87	+1.9
2,479,653	+				+2.6
2,479,656	-		CCNA_02339	0.88	+3.8
2,479,661	-		CCNA_02339	0.89	+4.5
2,479,700	-				+4.4
2,479,718	+				+2.6
2,479,726	-				+4.2
2,479,733	-				+4.2
2,479,768	-				+0.1
2,479,768	-				+1.4
2,479,794	-				+2.5
2,479,854	+				+0.0
2,479,862	-				+1.7