Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02304

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,448,733	+				+0.1
2,448,741	-				+0.2
2,448,790	-				-1.5
2,448,797	-		CCNA_02303	0.11	-0.5
2,448,797	-		CCNA_02303	0.11	-0.0
2,448,859	-		CCNA_02303	0.23	-2.7
2,449,029	+		CCNA_02303	0.54	+0.2
2,449,042	-		CCNA_02303	0.56	-0.4
2,449,042	-		CCNA_02303	0.56	-0.1
2,449,090	+		CCNA_02303	0.65	-0.1
2,449,110	+		CCNA_02303	0.68	-0.3
2,449,110	+		CCNA_02303	0.68	+0.5
2,449,118	-		CCNA_02303	0.70	+0.0
2,449,133	-		CCNA_02303	0.73	-1.3
2,449,133	-		CCNA_02303	0.73	-1.5
2,449,133	-		CCNA_02303	0.73	-0.3
2,449,133	-		CCNA_02303	0.73	+0.5
2,449,133	-		CCNA_02303	0.73	-2.2
2,449,133	-		CCNA_02303	0.73	+2.5
2,449,133	-		CCNA_02303	0.73	-0.8
2,449,133	-		CCNA_02303	0.73	+1.6
2,449,133	-		CCNA_02303	0.73	-1.7
2,449,133	-		CCNA_02303	0.73	+1.1
2,449,133	-		CCNA_02303	0.73	-0.9
2,449,133	-		CCNA_02303	0.73	+0.1
2,449,185	+		CCNA_02303	0.82	+0.0
2,449,188	-		CCNA_02303	0.83	+0.4
2,449,269	+				+0.7
2,449,269	+				+0.3
2,449,269	+				-0.3
2,449,277	-				-0.3
2,449,302	+				+3.5
2,449,303	+				+2.4
2,449,303	+				+1.8
2,449,311	-				-0.9
2,449,315	+				-0.1
2,449,328	+				+0.9
2,449,408	+				-1.4
2,449,422	-		CCNA_02304	0.11	-0.3
2,449,443	+		CCNA_02304	0.13	-0.3
2,449,491	+		CCNA_02304	0.18	+0.5
2,449,491	+		CCNA_02304	0.18	+2.5
2,449,491	+		CCNA_02304	0.18	+0.2
2,449,491	+		CCNA_02304	0.18	+0.4
2,449,491	+		CCNA_02304	0.18	-2.3
2,449,491	+		CCNA_02304	0.18	-0.3
2,449,491	+		CCNA_02304	0.18	+1.3
2,449,499	-		CCNA_02304	0.18	+1.5
2,449,499	-		CCNA_02304	0.18	-1.0
2,449,499	-		CCNA_02304	0.18	+0.5
2,449,499	-		CCNA_02304	0.18	+1.5
2,449,501	+		CCNA_02304	0.19	+2.5
2,449,509	-		CCNA_02304	0.19	-0.0
2,449,509	-		CCNA_02304	0.19	+0.2
2,449,509	-		CCNA_02304	0.19	+1.5
2,449,526	-		CCNA_02304	0.21	-1.4
2,449,546	+		CCNA_02304	0.23	-1.6
2,449,555	-		CCNA_02304	0.24	+1.5
2,449,604	+		CCNA_02304	0.29	-2.0
2,449,606	+		CCNA_02304	0.29	-0.9
2,449,614	-		CCNA_02304	0.30	-0.3
2,449,614	-		CCNA_02304	0.30	-0.8
2,449,625	+		CCNA_02304	0.31	-1.8
2,449,633	-		CCNA_02304	0.31	-0.0
2,449,646	+		CCNA_02304	0.33	-2.3
2,449,649	-		CCNA_02304	0.33	-2.2
2,449,665	+		CCNA_02304	0.35	+0.5
2,449,670	+		CCNA_02304	0.35	-0.0
2,449,670	+		CCNA_02304	0.35	-1.2
2,449,670	+		CCNA_02304	0.35	+2.0
2,449,670	+		CCNA_02304	0.35	-0.0
2,449,670	+		CCNA_02304	0.35	-0.8
2,449,678	-		CCNA_02304	0.36	+2.5
2,449,678	-		CCNA_02304	0.36	-1.3
2,449,678	-		CCNA_02304	0.36	-1.2
2,449,678	-		CCNA_02304	0.36	+0.5
2,449,715	+		CCNA_02304	0.39	-1.4
2,449,715	+		CCNA_02304	0.39	-1.5
2,449,804	+		CCNA_02304	0.48	+0.5
2,449,804	+		CCNA_02304	0.48	-1.8
2,449,811	+		CCNA_02304	0.49	-1.2
2,449,818	+		CCNA_02304	0.50	-1.9
2,449,822	+		CCNA_02304	0.50	-1.0
2,449,830	-		CCNA_02304	0.51	+0.2
2,449,830	-		CCNA_02304	0.51	+0.5
2,449,830	-		CCNA_02304	0.51	-0.6
2,449,847	+		CCNA_02304	0.52	-2.3
2,449,888	+		CCNA_02304	0.56	-3.0
2,449,891	-		CCNA_02304	0.57	-0.6
2,449,896	-		CCNA_02304	0.57	-0.5
2,449,903	+		CCNA_02304	0.58	-1.6
2,449,903	+		CCNA_02304	0.58	+1.0
2,449,940	+		CCNA_02304	0.61	-3.4
2,449,940	+		CCNA_02304	0.61	-0.0
2,449,940	+		CCNA_02304	0.61	-2.5
2,449,940	+		CCNA_02304	0.61	-0.2
2,449,940	+		CCNA_02304	0.61	-2.0
2,449,940	+		CCNA_02304	0.61	+1.0
2,449,940	+		CCNA_02304	0.61	-1.5
2,449,948	-		CCNA_02304	0.62	-0.4
2,449,948	-		CCNA_02304	0.62	-0.3
2,449,950	+		CCNA_02304	0.62	-0.0
2,449,953	-		CCNA_02304	0.63	-1.5
2,449,953	-		CCNA_02304	0.63	-1.3
2,449,976	+		CCNA_02304	0.65	-0.9
2,449,989	-		CCNA_02304	0.66	-0.6
2,450,048	+		CCNA_02304	0.72	-0.5
2,450,078	-		CCNA_02304	0.75	+1.0
2,450,101	+		CCNA_02304	0.77	-0.9
2,450,109	-		CCNA_02304	0.78	-1.0
2,450,109	-		CCNA_02304	0.78	-0.5
2,450,236	-				-1.7
2,450,241	-				-2.6
2,450,241	-				+0.5
2,450,241	-				-0.3
2,450,293	+				-0.4
2,450,311	-				-1.7
2,450,325	+				+0.0
2,450,488	-				-0.3
2,450,540	+		CCNA_02305	0.13	+1.1
2,450,540	+		CCNA_02305	0.13	+0.0
2,450,540	+		CCNA_02305	0.13	+1.5
2,450,540	+		CCNA_02305	0.13	+0.5
2,450,548	-		CCNA_02305	0.14	+1.2
2,450,574	+		CCNA_02305	0.17	+0.5
2,450,597	-		CCNA_02305	0.20	-0.8
2,450,597	-		CCNA_02305	0.20	+0.4
2,450,597	-		CCNA_02305	0.20	-0.0
2,450,630	+		CCNA_02305	0.24	+1.1
2,450,633	+		CCNA_02305	0.24	-1.0
2,450,655	-		CCNA_02305	0.27	-0.2
2,450,655	-		CCNA_02305	0.27	-1.1
2,450,701	-		CCNA_02305	0.33	-0.8
2,450,707	-		CCNA_02305	0.34	-0.5
2,450,724	+		CCNA_02305	0.36	+0.6
2,450,735	+		CCNA_02305	0.37	+1.7
2,450,813	+		CCNA_02305	0.47	+0.7
2,450,820	+		CCNA_02305	0.48	-0.5
2,450,821	-		CCNA_02305	0.48	-1.3
2,450,876	-		CCNA_02305	0.55	-0.8
2,450,883	+		CCNA_02305	0.56	+0.4
2,450,883	+		CCNA_02305	0.56	-0.0
2,450,883	+		CCNA_02305	0.56	+0.4
2,450,908	+		CCNA_02305	0.59	+0.3
2,450,919	+		CCNA_02305	0.60	+2.3
2,450,919	+		CCNA_02305	0.60	+0.9
2,450,925	+		CCNA_02305	0.61	-0.9
2,450,927	-		CCNA_02305	0.61	-0.1
2,450,942	+		CCNA_02305	0.63	-1.8
2,450,950	-		CCNA_02305	0.64	+0.4
2,450,989	+		CCNA_02305	0.69	+0.5
2,451,003	-		CCNA_02305	0.71	-2.5
2,451,140	+		CCNA_02305	0.88	+0.6
2,451,165	+				+0.7
2,451,202	+				+0.9
2,451,213	-				+0.5
2,451,216	+				+0.2
2,451,260	-				+0.6
2,451,279	-				-0.8
2,451,334	+				+0.7
2,451,334	+				-0.5