Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02291

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,437,367	-				-1.0
2,437,377	-				-0.2
2,437,404	+		CCNA_02289	0.12	+1.5
2,437,464	-		CCNA_02289	0.31	+2.5
2,437,482	-		CCNA_02289	0.37	+2.6
2,437,488	-		CCNA_02289	0.39	+2.6
2,437,488	-		CCNA_02289	0.39	+2.3
2,437,517	-		CCNA_02289	0.48	+2.4
2,437,543	-		CCNA_02289	0.57	+2.4
2,437,595	-		CCNA_02289	0.73	+2.5
2,437,595	-		CCNA_02289	0.73	+2.5
2,437,600	-		CCNA_02289	0.75	+2.5
2,437,605	-		CCNA_02289	0.77	+2.5
2,437,605	-		CCNA_02289	0.77	+2.4
2,437,605	-		CCNA_02289	0.77	+2.8
2,437,613	+		CCNA_02289	0.79	+2.5
2,437,672	-				+2.3
2,437,691	-				+2.8
2,437,751	+		CCNA_02290	0.10	+0.2
2,437,751	+		CCNA_02290	0.10	+0.9
2,437,759	-		CCNA_02290	0.11	-0.3
2,437,830	-		CCNA_02290	0.22	+1.4
2,437,873	-		CCNA_02290	0.29	-1.2
2,437,873	-		CCNA_02290	0.29	+1.2
2,437,873	-		CCNA_02290	0.29	-0.2
2,437,878	+		CCNA_02290	0.30	-0.5
2,437,899	+		CCNA_02290	0.33	-0.3
2,437,901	-		CCNA_02290	0.33	-0.1
2,438,120	-		CCNA_02290	0.67	+0.6
2,438,143	-		CCNA_02290	0.71	+1.4
2,438,188	+		CCNA_02290	0.77	+0.5
2,438,188	+		CCNA_02290	0.77	+0.5
2,438,196	-		CCNA_02290	0.79	-0.9
2,438,201	-		CCNA_02290	0.79	+3.5
2,438,211	+		CCNA_02290	0.81	-1.1
2,438,211	+		CCNA_02290	0.81	-2.0
2,438,226	+		CCNA_02290	0.83	-1.3
2,438,301	+				-0.5
2,438,301	+				-0.8
2,438,301	+				-0.3
2,438,309	-				-0.7
2,438,331	-				-1.3
2,438,394	-				+0.2
2,438,398	+				+0.5
2,438,403	+				+1.5
2,438,408	+				-1.3
2,438,413	-				+0.3
2,438,416	-				-0.8
2,438,423	+				+1.5
2,438,439	+				-0.3
2,438,439	+				-1.8
2,438,447	-				-0.8
2,438,447	-				-1.5
2,438,457	-				+0.9
2,438,479	+		CCNA_02291	0.10	+0.9
2,438,512	+		CCNA_02291	0.13	+1.5
2,438,512	+		CCNA_02291	0.13	+3.1
2,438,520	-		CCNA_02291	0.14	-0.5
2,438,556	-		CCNA_02291	0.17	+0.5
2,438,563	+		CCNA_02291	0.17	-0.6
2,438,573	+		CCNA_02291	0.18	-1.6
2,438,585	+		CCNA_02291	0.19	-1.5
2,438,585	+		CCNA_02291	0.19	-0.7
2,438,590	+		CCNA_02291	0.19	-1.3
2,438,605	+		CCNA_02291	0.21	-1.2
2,438,605	+		CCNA_02291	0.21	+0.0
2,438,608	-		CCNA_02291	0.21	+0.0
2,438,608	-		CCNA_02291	0.21	-1.5
2,438,608	-		CCNA_02291	0.21	+0.2
2,438,609	+		CCNA_02291	0.21	-0.1
2,438,613	-		CCNA_02291	0.21	-0.2
2,438,615	+		CCNA_02291	0.21	+0.5
2,438,615	+		CCNA_02291	0.21	+0.9
2,438,623	-		CCNA_02291	0.22	-2.3
2,438,623	-		CCNA_02291	0.22	+1.5
2,438,712	-		CCNA_02291	0.29	-0.6
2,438,732	-		CCNA_02291	0.31	-0.8
2,438,742	+		CCNA_02291	0.32	+0.2
2,438,764	+		CCNA_02291	0.33	+2.9
2,438,779	+		CCNA_02291	0.35	-0.1
2,438,787	-		CCNA_02291	0.35	-0.3
2,438,787	-		CCNA_02291	0.35	+0.7
2,438,827	+		CCNA_02291	0.38	-1.5
2,438,834	+		CCNA_02291	0.39	-1.3
2,438,842	-		CCNA_02291	0.40	+0.3
2,438,852	+		CCNA_02291	0.40	+1.5
2,438,852	+		CCNA_02291	0.40	-0.7
2,438,853	+		CCNA_02291	0.41	+0.9
2,438,860	-		CCNA_02291	0.41	-1.3
2,438,860	-		CCNA_02291	0.41	+0.5
2,438,860	-		CCNA_02291	0.41	+0.7
2,438,860	-		CCNA_02291	0.41	-2.4
2,438,860	-		CCNA_02291	0.41	-0.2
2,438,868	+		CCNA_02291	0.42	-0.5
2,438,878	-		CCNA_02291	0.43	+3.2
2,438,878	-		CCNA_02291	0.43	+2.8
2,438,894	+		CCNA_02291	0.44	+0.5
2,438,902	-		CCNA_02291	0.44	-1.4
2,438,902	-		CCNA_02291	0.44	-0.7
2,438,917	-		CCNA_02291	0.46	-0.7
2,438,917	-		CCNA_02291	0.46	-1.1
2,438,919	-		CCNA_02291	0.46	-2.0
2,438,959	+		CCNA_02291	0.49	+0.5
2,438,987	-		CCNA_02291	0.51	+0.9
2,439,035	+		CCNA_02291	0.55	-0.7
2,439,075	-		CCNA_02291	0.58	-0.5
2,439,098	-		CCNA_02291	0.60	-0.3
2,439,103	-		CCNA_02291	0.61	+0.7
2,439,217	-		CCNA_02291	0.70	-2.1
2,439,239	+		CCNA_02291	0.72	+1.5
2,439,239	-		CCNA_02291	0.72	-0.2
2,439,263	-		CCNA_02291	0.74	-0.1
2,439,276	+		CCNA_02291	0.75	+0.9
2,439,281	+		CCNA_02291	0.75	+2.5
2,439,294	-		CCNA_02291	0.76	-0.1
2,439,337	-		CCNA_02291	0.80	+0.5
2,439,342	+		CCNA_02291	0.80	+1.5
2,439,352	+		CCNA_02291	0.81	+1.5
2,439,438	-		CCNA_02291	0.88	-1.0
2,439,450	+		CCNA_02291	0.89	+0.5
2,439,451	-		CCNA_02291	0.89	-0.5
2,439,451	-		CCNA_02291	0.89	+0.2
2,439,451	-		CCNA_02291	0.89	-0.9
2,439,451	-		CCNA_02291	0.89	+0.7
2,439,458	-		CCNA_02291	0.89	+2.5
2,439,458	-		CCNA_02291	0.89	+0.0
2,439,458	-		CCNA_02291	0.89	-0.4
2,439,508	-				+2.5
2,439,529	-				-0.5
2,439,571	-				+1.9
2,439,574	+				-0.2
2,439,592	-				+0.9
2,439,655	+				+0.4
2,439,668	+				+0.5
2,439,679	+				-0.2
2,439,699	+				+0.9
2,439,721	-				-0.5
2,439,831	-				-0.4
2,439,832	-				-0.8
2,439,904	+		CCNA_02292	0.16	-2.6
2,439,934	+		CCNA_02292	0.20	-1.2
2,439,942	-		CCNA_02292	0.21	+1.7
2,439,964	+		CCNA_02292	0.24	-1.4
2,439,973	-		CCNA_02292	0.25	+0.2
2,440,019	+		CCNA_02292	0.31	+0.9
2,440,094	+		CCNA_02292	0.42	-0.5
2,440,094	+		CCNA_02292	0.42	+0.9
2,440,112	+		CCNA_02292	0.44	+1.2
2,440,131	-		CCNA_02292	0.47	+0.4
2,440,144	-		CCNA_02292	0.48	+0.8
2,440,218	-		CCNA_02292	0.59	+2.2
2,440,223	-		CCNA_02292	0.59	-1.6
2,440,233	-		CCNA_02292	0.61	-0.8
2,440,233	-		CCNA_02292	0.61	-1.6
2,440,233	-		CCNA_02292	0.61	-0.4
2,440,240	+		CCNA_02292	0.62	-0.1
2,440,240	+		CCNA_02292	0.62	-1.4
2,440,248	-		CCNA_02292	0.63	+1.2
2,440,248	-		CCNA_02292	0.63	+3.5
2,440,248	-		CCNA_02292	0.63	-0.2
2,440,248	-		CCNA_02292	0.63	+0.2
2,440,311	-		CCNA_02292	0.71	+1.2
2,440,330	+		CCNA_02292	0.74	+0.2
2,440,401	+		CCNA_02292	0.84	+0.2
2,440,448	+				-1.3
2,440,448	+				+0.9
2,440,453	+				-2.1
2,440,453	+				+0.4
2,440,456	-				+1.3
2,440,456	-				+0.7
2,440,461	-				-1.3
2,440,473	+				-1.0
2,440,473	+				+0.9
2,440,473	+				+0.0
2,440,481	-				+1.0
2,440,481	-				+0.0
2,440,481	-				+1.0
2,440,519	+				-0.1
2,440,578	+				-0.1