Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02284

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,433,159	-		CCNA_02282	0.60	-0.1
2,433,214	+		CCNA_02282	0.70	+1.5
2,433,254	-		CCNA_02282	0.78	-1.5
2,433,309	-		CCNA_02282	0.88	+0.2
2,433,329	+				-3.8
2,433,379	-				+0.8
2,433,504	+		CCNA_02283	0.19	-0.8
2,433,512	+		CCNA_02283	0.20	-1.2
2,433,520	-		CCNA_02283	0.22	-0.7
2,433,520	-		CCNA_02283	0.22	-0.3
2,433,520	-		CCNA_02283	0.22	-0.8
2,433,548	+		CCNA_02283	0.27	+0.9
2,433,565	+		CCNA_02283	0.30	-0.5
2,433,603	-		CCNA_02283	0.37	-0.7
2,433,651	-		CCNA_02283	0.45	+0.9
2,433,651	-		CCNA_02283	0.45	+0.2
2,433,659	-		CCNA_02283	0.46	+0.9
2,433,662	+		CCNA_02283	0.47	+0.5
2,433,699	+		CCNA_02283	0.54	-2.6
2,433,701	-		CCNA_02283	0.54	-0.0
2,433,707	-		CCNA_02283	0.55	-1.0
2,433,727	+		CCNA_02283	0.59	-1.5
2,433,753	+		CCNA_02283	0.63	-1.3
2,433,761	-		CCNA_02283	0.65	+0.7
2,433,763	+		CCNA_02283	0.65	-0.7
2,433,801	+		CCNA_02283	0.72	-0.5
2,433,811	+		CCNA_02283	0.73	-0.4
2,433,819	-		CCNA_02283	0.75	+0.9
2,433,852	+		CCNA_02283	0.81	-0.8
2,433,852	+		CCNA_02283	0.81	-1.0
2,433,860	-		CCNA_02283	0.82	-0.2
2,433,862	+		CCNA_02283	0.82	-1.8
2,433,930	-				-0.7
2,433,930	-				-1.0
2,433,943	+				-1.2
2,433,952	-				-1.0
2,433,954	+				-0.3
2,433,954	+				+0.5
2,434,004	+				-1.2
2,434,017	-				-2.1
2,434,152	-				-0.1
2,434,166	+				+0.5
2,434,171	+				-1.2
2,434,174	-				-0.5
2,434,174	-				-0.1
2,434,227	-		CCNA_02284	0.16	+0.2
2,434,246	+		CCNA_02284	0.19	-0.1
2,434,246	+		CCNA_02284	0.19	-0.1
2,434,254	-		CCNA_02284	0.20	-0.5
2,434,254	-		CCNA_02284	0.20	-1.4
2,434,270	-		CCNA_02284	0.23	-1.1
2,434,282	-		CCNA_02284	0.25	-1.3
2,434,317	+		CCNA_02284	0.30	-1.1
2,434,322	+		CCNA_02284	0.31	-1.4
2,434,339	+		CCNA_02284	0.34	+0.2
2,434,339	+		CCNA_02284	0.34	+0.5
2,434,375	+		CCNA_02284	0.39	-0.5
2,434,383	-		CCNA_02284	0.40	-2.0
2,434,385	+		CCNA_02284	0.41	-2.3
2,434,455	-		CCNA_02284	0.52	-1.7
2,434,485	-		CCNA_02284	0.56	+1.5
2,434,491	+		CCNA_02284	0.57	-0.3
2,434,562	-		CCNA_02284	0.68	-1.1
2,434,595	+		CCNA_02284	0.74	-0.3
2,434,628	+		CCNA_02284	0.79	-0.8
2,434,642	+		CCNA_02284	0.81	-2.3
2,434,650	-		CCNA_02284	0.82	+1.5
2,434,674	-		CCNA_02284	0.86	+1.2
2,434,704	-				-1.0
2,434,714	-				-0.8
2,434,797	-				+1.6
2,434,807	-				+1.5
2,434,887	+		CCNA_02285	0.15	-1.9
2,434,887	-		CCNA_02285	0.15	+1.2
2,434,907	+		CCNA_02285	0.19	+0.2
2,434,907	+		CCNA_02285	0.19	-1.0
2,434,915	-		CCNA_02285	0.20	+0.4
2,434,917	-		CCNA_02285	0.21	+1.0
2,434,936	+		CCNA_02285	0.25	-0.2
2,434,936	+		CCNA_02285	0.25	-1.6
2,434,944	-		CCNA_02285	0.27	+0.4
2,434,944	-		CCNA_02285	0.27	+1.2
2,434,945	-		CCNA_02285	0.27	+1.5
2,434,972	-		CCNA_02285	0.32	-0.5
2,434,972	-		CCNA_02285	0.32	+0.7
2,434,993	+		CCNA_02285	0.37	-1.8
2,435,019	-		CCNA_02285	0.42	+0.1
2,435,021	+		CCNA_02285	0.42	-1.3
2,435,036	+		CCNA_02285	0.46	+0.5
2,435,077	-		CCNA_02285	0.54	+0.7
2,435,077	-		CCNA_02285	0.54	-0.4
2,435,098	+		CCNA_02285	0.58	-1.2
2,435,098	+		CCNA_02285	0.58	-0.2
2,435,098	+		CCNA_02285	0.58	-1.9
2,435,106	-		CCNA_02285	0.60	+2.5
2,435,106	-		CCNA_02285	0.60	+1.1
2,435,106	-		CCNA_02285	0.60	-0.9
2,435,137	+		CCNA_02285	0.66	+1.5
2,435,149	+		CCNA_02285	0.69	-0.1
2,435,157	-		CCNA_02285	0.71	+1.4
2,435,204	+		CCNA_02285	0.80	-2.1
2,435,281	+				-0.9
2,435,338	+				-0.7
2,435,346	-				+1.6
2,435,351	-				+1.0
2,435,361	-				+0.0
2,435,370	-				+1.9
2,435,403	+				-2.1
2,435,403	+				-1.5
2,435,411	-				-0.7
2,435,440	+				+2.5
2,435,440	+				-0.1
2,435,448	-				-0.7
2,435,448	-				+1.5
2,435,496	-		CCNA_02286	0.18	-1.9
2,435,509	+		CCNA_02286	0.30	-1.0
2,435,620	+				-0.5
2,435,621	+				-0.2
2,435,630	-				-1.3
2,435,662	-				+0.2
2,435,751	-				-0.7
2,435,751	-				+2.5