Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02268

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,419,945	-		CCNA_02266	0.71	+0.1
2,419,945	-		CCNA_02266	0.71	+2.1
2,419,962	+		CCNA_02266	0.73	-0.9
2,420,046	+		CCNA_02266	0.80	+0.9
2,420,052	+		CCNA_02266	0.81	-1.5
2,420,060	-		CCNA_02266	0.82	+0.9
2,420,072	+		CCNA_02266	0.83	-2.3
2,420,080	-		CCNA_02266	0.84	+0.5
2,420,090	-		CCNA_02266	0.85	-1.4
2,420,106	+		CCNA_02266	0.86	-1.5
2,420,106	+		CCNA_02266	0.86	+0.8
2,420,114	-		CCNA_02266	0.87	+0.5
2,420,114	-		CCNA_02266	0.87	-1.1
2,420,114	-		CCNA_02266	0.87	+1.5
2,420,152	+				-1.3
2,420,153	+				+1.1
2,420,153	+				+0.1
2,420,161	-				-1.0
2,420,161	-				-0.5
2,420,171	-				-0.9
2,420,171	-				-2.9
2,420,171	-				-1.3
2,420,171	-				-1.0
2,420,171	-				-0.9
2,420,178	+				-1.1
2,420,178	+				+0.1
2,420,186	-				-3.1
2,420,186	-				-0.7
2,420,217	-				-0.3
2,420,238	+				-0.4
2,420,241	-				+0.9
2,420,243	+				-2.4
2,420,310	+				+0.1
2,420,320	+				-0.1
2,420,328	-				-2.1
2,420,361	+				+0.1
2,420,361	+				-0.5
2,420,367	-				-0.7
2,420,372	+				-0.7
2,420,372	+				-3.5
2,420,393	+				+0.5
2,420,407	+				+2.5
2,420,415	-				+0.1
2,420,417	+				-0.7
2,420,428	-		CCNA_02267	0.10	-0.5
2,420,454	+		CCNA_02267	0.14	-0.2
2,420,460	+		CCNA_02267	0.15	-0.4
2,420,462	-		CCNA_02267	0.16	-0.7
2,420,462	-		CCNA_02267	0.16	-0.5
2,420,465	+		CCNA_02267	0.16	-3.0
2,420,465	+		CCNA_02267	0.16	-1.1
2,420,473	-		CCNA_02267	0.17	-1.3
2,420,503	+		CCNA_02267	0.22	+0.0
2,420,516	-		CCNA_02267	0.24	-0.1
2,420,516	-		CCNA_02267	0.24	-1.2
2,420,534	+		CCNA_02267	0.27	-1.0
2,420,542	-		CCNA_02267	0.29	-0.6
2,420,542	-		CCNA_02267	0.29	-0.9
2,420,575	+		CCNA_02267	0.34	+3.5
2,420,579	+		CCNA_02267	0.34	+1.9
2,420,598	-		CCNA_02267	0.38	-1.0
2,420,735	-		CCNA_02267	0.59	-2.3
2,420,745	-		CCNA_02267	0.61	-2.1
2,420,809	+		CCNA_02267	0.71	-1.3
2,420,857	-		CCNA_02267	0.79	+0.9
2,420,857	-		CCNA_02267	0.79	+0.5
2,420,886	-		CCNA_02267	0.84	-0.7
2,420,895	+		CCNA_02267	0.85	-1.0
2,420,895	+				+2.5
2,420,903	-		CCNA_02267	0.86	-1.2
2,420,944	-				-1.2
2,420,969	-				-0.6
2,421,008	+		CCNA_02268	0.11	-2.6
2,421,055	+		CCNA_02268	0.18	+1.9
2,421,077	-		CCNA_02268	0.21	+0.9
2,421,091	+		CCNA_02268	0.24	-2.1
2,421,092	+		CCNA_02268	0.24	+1.5
2,421,094	-		CCNA_02268	0.24	-0.9
2,421,100	-		CCNA_02268	0.25	+0.9
2,421,125	+		CCNA_02268	0.29	+0.9
2,421,132	-		CCNA_02268	0.30	-2.3
2,421,139	+		CCNA_02268	0.31	-0.2
2,421,147	-		CCNA_02268	0.32	+1.5
2,421,147	-		CCNA_02268	0.32	-0.3
2,421,147	-		CCNA_02268	0.32	-2.2
2,421,147	-		CCNA_02268	0.32	-0.2
2,421,147	-		CCNA_02268	0.32	+0.7
2,421,147	-		CCNA_02268	0.32	+0.1
2,421,149	+		CCNA_02268	0.33	-1.7
2,421,150	+		CCNA_02268	0.33	-1.1
2,421,157	-		CCNA_02268	0.34	-0.9
2,421,160	+		CCNA_02268	0.34	-0.7
2,421,210	-		CCNA_02268	0.42	+1.5
2,421,221	-		CCNA_02268	0.44	-1.9
2,421,226	-		CCNA_02268	0.44	+1.6
2,421,229	+		CCNA_02268	0.45	-0.1
2,421,236	+		CCNA_02268	0.46	-1.9
2,421,236	+		CCNA_02268	0.46	-0.9
2,421,236	+		CCNA_02268	0.46	-1.3
2,421,236	+		CCNA_02268	0.46	+0.5
2,421,236	+		CCNA_02268	0.46	-1.3
2,421,236	+				+1.5
2,421,236	+		CCNA_02268	0.46	-0.9
2,421,237	-		CCNA_02268	0.46	-0.9
2,421,249	-		CCNA_02268	0.48	-2.1
2,421,249	-		CCNA_02268	0.48	-0.1
2,421,249	-		CCNA_02268	0.48	-1.1
2,421,278	-		CCNA_02268	0.52	+0.9
2,421,321	+		CCNA_02268	0.59	-2.1
2,421,384	+		CCNA_02268	0.69	+0.5
2,421,410	-		CCNA_02268	0.73	-1.4
2,421,447	-		CCNA_02268	0.79	+0.5
2,421,454	+		CCNA_02268	0.80	+0.8
2,421,454	+		CCNA_02268	0.80	-0.6
2,421,462	-		CCNA_02268	0.81	-0.5
2,421,474	+		CCNA_02268	0.83	-1.8
2,421,499	-		CCNA_02268	0.87	-0.2
2,421,505	-		CCNA_02268	0.88	-0.3
2,421,541	-				-0.9
2,421,549	-				+0.5
2,421,554	-				+1.5
2,421,565	-				+0.1
2,421,586	+				+0.9
2,421,586	+				+1.5
2,421,652	+				+0.1
2,421,660	-				+0.1
2,421,660	-				-2.5
2,421,660	-				+0.1
2,421,681	-				-0.5
2,421,703	-				-1.6
2,421,895	-				+1.7
2,421,956	+				+0.5
2,421,956	+				-0.3
2,421,956	+				-0.3
2,421,956	+				-1.6
2,421,956	+				-0.1
2,421,956	+				+0.3
2,421,964	-				-0.3
2,421,964	-				-1.3
2,421,988	+				-2.3
2,421,988	+				+0.6
2,421,993	+				-0.1
2,422,001	-				+1.9
2,422,002	+				-0.4
2,422,034	+				-0.7
2,422,037	-				-0.3
2,422,037	-				-2.1
2,422,037	-				-1.4
2,422,051	+				-1.3
2,422,079	+				-0.5
2,422,089	+		CCNA_02269	0.10	+0.4
2,422,089	+		CCNA_02269	0.10	-0.2
2,422,096	+		CCNA_02269	0.11	+1.4
2,422,096	+		CCNA_02269	0.11	+0.9
2,422,104	-		CCNA_02269	0.12	-1.3
2,422,104	-		CCNA_02269	0.12	-1.0
2,422,104	-		CCNA_02269	0.12	-1.0
2,422,118	-		CCNA_02269	0.13	+0.1
2,422,131	+		CCNA_02269	0.15	+0.2
2,422,171	-		CCNA_02269	0.19	-1.1
2,422,243	+		CCNA_02269	0.26	-1.1
2,422,245	+		CCNA_02269	0.26	-1.8
2,422,251	-		CCNA_02269	0.27	-0.2
2,422,252	-		CCNA_02269	0.27	+1.6
2,422,252	-		CCNA_02269	0.27	-1.6
2,422,263	-		CCNA_02269	0.28	+1.1
2,422,263	-		CCNA_02269	0.28	-0.4
2,422,271	+		CCNA_02269	0.29	-0.1
2,422,354	+		CCNA_02269	0.37	-1.4
2,422,412	+		CCNA_02269	0.43	+0.4
2,422,438	-		CCNA_02269	0.46	-0.9
2,422,458	+		CCNA_02269	0.48	+0.4
2,422,479	+		CCNA_02269	0.50	-0.1
2,422,490	+		CCNA_02269	0.51	-0.1
2,422,519	-		CCNA_02269	0.54	-0.3
2,422,531	+		CCNA_02269	0.55	-1.2
2,422,579	+		CCNA_02269	0.60	+0.4