Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02186

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,336,882	-		CCNA_02185	0.47	-1.0
2,336,882	-		CCNA_02185	0.47	-0.7
2,336,980	+		CCNA_02185	0.53	+0.0
2,337,016	-		CCNA_02185	0.55	-1.2
2,337,072	-		CCNA_02185	0.58	+2.5
2,337,188	-		CCNA_02185	0.64	+2.9
2,337,218	+		CCNA_02185	0.66	-0.3
2,337,226	-		CCNA_02185	0.66	-2.4
2,337,228	+		CCNA_02185	0.67	-1.3
2,337,234	+		CCNA_02185	0.67	+2.5
2,337,234	+		CCNA_02185	0.67	+0.9
2,337,234	+		CCNA_02185	0.67	+0.9
2,337,234	+		CCNA_02185	0.67	+0.9
2,337,242	-		CCNA_02185	0.67	-1.0
2,337,242	-		CCNA_02185	0.67	-0.1
2,337,242	-		CCNA_02185	0.67	+0.9
2,337,243	+		CCNA_02185	0.67	+2.5
2,337,251	-		CCNA_02185	0.68	-0.3
2,337,252	-		CCNA_02185	0.68	+0.1
2,337,268	-		CCNA_02185	0.69	+0.1
2,337,276	+		CCNA_02185	0.69	-1.7
2,337,276	+		CCNA_02185	0.69	-0.2
2,337,276	+		CCNA_02185	0.69	-1.1
2,337,284	-		CCNA_02185	0.70	-0.2
2,337,284	-		CCNA_02185	0.70	-1.9
2,337,286	+		CCNA_02185	0.70	+3.5
2,337,326	+		CCNA_02185	0.72	-0.8
2,337,336	+		CCNA_02185	0.73	-1.1
2,337,344	-		CCNA_02185	0.73	+0.9
2,337,355	+		CCNA_02185	0.74	-0.3
2,337,411	-		CCNA_02185	0.77	-1.8
2,337,538	-		CCNA_02185	0.84	-0.3
2,337,552	+		CCNA_02185	0.84	-1.2
2,337,564	+		CCNA_02185	0.85	-0.5
2,337,572	-		CCNA_02185	0.86	+0.5
2,337,662	-				+0.1
2,337,702	-				-1.1
2,337,726	-				+2.5
2,337,726	-				+0.5
2,337,742	-				-1.7
2,337,776	-				-0.7
2,337,779	+				-1.2
2,337,789	-				+0.1
2,337,815	+				-1.0
2,337,825	+				+2.5
2,337,825	+				-0.5
2,337,825	+				+0.1
2,337,825	+				+0.9
2,337,825	+				-1.5
2,337,833	-				+0.5
2,337,833	-				-1.1
2,337,834	-				+1.5
2,337,835	+				-1.0
2,337,846	+				-1.2
2,337,849	-				-1.9
2,337,878	-				-0.3
2,337,907	+				-0.7
2,337,907	+				+0.1
2,337,915	-				+1.5
2,337,924	-				-2.1
2,337,928	-				+1.5
2,337,932	+		CCNA_02186	0.10	+0.9
2,337,935	-		CCNA_02186	0.11	-0.1
2,337,950	+		CCNA_02186	0.14	+1.5
2,337,982	+		CCNA_02186	0.19	-0.3
2,338,017	+		CCNA_02186	0.26	+0.9
2,338,034	+		CCNA_02186	0.29	+0.8
2,338,063	+		CCNA_02186	0.34	-1.8
2,338,084	+		CCNA_02186	0.38	-2.9
2,338,084	-		CCNA_02186	0.38	-1.5
2,338,108	+		CCNA_02186	0.42	-0.5
2,338,113	+		CCNA_02186	0.43	-0.5
2,338,119	+		CCNA_02186	0.44	-0.8
2,338,121	-		CCNA_02186	0.44	-1.1
2,338,127	-		CCNA_02186	0.45	+1.1
2,338,127	-		CCNA_02186	0.45	-0.9
2,338,137	-		CCNA_02186	0.47	+1.1
2,338,143	+		CCNA_02186	0.48	+0.9
2,338,152	-		CCNA_02186	0.50	+0.1
2,338,204	+		CCNA_02186	0.59	-2.5
2,338,209	+		CCNA_02186	0.60	+0.5
2,338,216	-		CCNA_02186	0.61	-1.3
2,338,236	-		CCNA_02186	0.65	-0.9
2,338,239	+		CCNA_02186	0.65	-1.2
2,338,239	+		CCNA_02186	0.65	-2.1
2,338,292	+		CCNA_02186	0.75	-2.2
2,338,294	+		CCNA_02186	0.75	-0.3
2,338,294	-		CCNA_02186	0.75	+0.1
2,338,319	+		CCNA_02186	0.80	-0.7
2,338,324	+		CCNA_02186	0.81	-0.7
2,338,327	-				+2.5
2,338,337	-		CCNA_02186	0.83	-0.0
2,338,337	-		CCNA_02186	0.83	-0.2
2,338,346	+		CCNA_02186	0.85	-0.9
2,338,364	+		CCNA_02186	0.88	-1.3
2,338,364	+		CCNA_02186	0.88	-0.5
2,338,364	+		CCNA_02186	0.88	-0.4
2,338,378	-				+0.1
2,338,381	-				-0.1
2,338,381	-				+1.1
2,338,383	+				+0.4
2,338,423	-				-0.5
2,338,423	-				+0.1
2,338,430	+				+2.1
2,338,438	-				-2.1
2,338,441	+				-1.4
2,338,441	+				+0.3
2,338,456	+				+2.5
2,338,458	+				+0.7
2,338,464	+				-0.5
2,338,465	-				-1.9
2,338,638	+				+1.0
2,338,638	+				+2.5
2,338,825	+				-0.3
2,338,877	-				-0.7
2,338,877	-				-2.2
2,338,904	-				-2.9
2,338,979	+				+1.5
2,338,987	-				-0.6
2,339,088	+				+1.5
2,339,092	+				+1.5
2,339,138	+				+4.1
2,339,218	+		CCNA_02187	0.26	+1.1
2,339,229	-		CCNA_02187	0.28	-0.4
2,339,312	+		CCNA_02187	0.45	+1.8
2,339,312	+		CCNA_02187	0.45	+2.5
2,339,320	-		CCNA_02187	0.47	+1.5
2,339,357	+		CCNA_02187	0.55	+1.7
2,339,366	-		CCNA_02187	0.56	+0.1
2,339,377	+		CCNA_02187	0.59	+1.8
2,339,377	+		CCNA_02187	0.59	+0.4
2,339,377	+		CCNA_02187	0.59	+0.0
2,339,395	+		CCNA_02187	0.62	+1.8
2,339,395	+		CCNA_02187	0.62	+1.0
2,339,395	+		CCNA_02187	0.62	+1.0
2,339,395	+		CCNA_02187	0.62	+2.4
2,339,395	+		CCNA_02187	0.62	+3.2
2,339,403	-		CCNA_02187	0.64	-1.5
2,339,403	-		CCNA_02187	0.64	-0.3
2,339,403	-				+0.9