Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02161

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,315,245	-		CCNA_02159	0.58	-0.5
2,315,318	-		CCNA_02159	0.72	+0.1
2,315,354	-		CCNA_02159	0.78	-0.7
2,315,383	+		CCNA_02159	0.83	-1.2
2,315,388	+		CCNA_02159	0.84	-1.1
2,315,388	+		CCNA_02159	0.84	-2.1
2,315,396	-		CCNA_02159	0.86	-1.5
2,315,396	-		CCNA_02159	0.86	-0.9
2,315,396	-		CCNA_02159	0.86	-1.4
2,315,396	-		CCNA_02159	0.86	+1.7
2,315,396	-		CCNA_02159	0.86	-0.7
2,315,396	-		CCNA_02159	0.86	-0.9
2,315,396	-		CCNA_02159	0.86	-0.1
2,315,396	-		CCNA_02159	0.86	-1.1
2,315,400	+		CCNA_02159	0.86	-0.4
2,315,425	-				-1.3
2,315,432	+				-0.3
2,315,588	+				-1.4
2,315,633	+				+0.5
2,315,641	-		CCNA_02160	0.11	-1.2
2,315,641	-		CCNA_02160	0.11	-0.7
2,315,667	-		CCNA_02160	0.16	-0.1
2,315,690	+		CCNA_02160	0.20	-0.3
2,315,744	-		CCNA_02160	0.31	-2.4
2,315,801	-		CCNA_02160	0.42	-1.3
2,315,827	-		CCNA_02160	0.47	-0.1
2,315,844	-		CCNA_02160	0.51	-0.7
2,315,948	+				+1.5
2,316,005	+		CCNA_02160	0.82	+0.7
2,316,024	+		CCNA_02160	0.86	+0.1
2,316,041	+		CCNA_02160	0.89	-0.5
2,316,046	+				+0.4
2,316,051	+				+2.5
2,316,051	-				-0.3
2,316,054	-				+0.2
2,316,054	-				-0.1
2,316,068	+				+1.5
2,316,417	+		CCNA_02161	0.28	+2.1
2,316,441	-		CCNA_02161	0.32	-0.8
2,316,449	-		CCNA_02161	0.33	+0.5
2,316,451	+		CCNA_02161	0.33	+2.6
2,316,490	+		CCNA_02161	0.39	+1.6
2,316,519	+		CCNA_02161	0.44	+2.3
2,316,553	-		CCNA_02161	0.49	-0.7
2,316,616	-		CCNA_02161	0.58	+2.5
2,316,653	+		CCNA_02161	0.64	+3.9
2,316,711	+		CCNA_02161	0.72	+1.4
2,316,711	+		CCNA_02161	0.72	+1.1
2,316,711	+		CCNA_02161	0.72	+1.5
2,316,719	-		CCNA_02161	0.74	+0.5
2,316,719	-		CCNA_02161	0.74	+2.5
2,316,741	-		CCNA_02161	0.77	+0.5
2,316,744	-		CCNA_02161	0.77	+0.2
2,316,748	+				+1.5
2,316,931	+				+1.0
2,316,944	+				-0.4
2,316,944	+				+1.1
2,316,952	-				-0.8
2,316,977	+				-1.1
2,316,977	+				+1.2
2,316,977	+				-0.4
2,316,992	+				+2.5
2,317,011	-				-0.2
2,317,011	-				-0.6
2,317,021	+				+0.2
2,317,021	+				-1.0
2,317,021	+				+1.5
2,317,021	+				-0.7
2,317,029	-				-0.3
2,317,029	-				-1.2
2,317,040	+				-0.8
2,317,114	+				+0.5
2,317,160	-				-0.1
2,317,160	-				+0.6
2,317,162	-				-2.0
2,317,176	-				+2.9
2,317,178	+				-1.2
2,317,181	-				+1.5
2,317,181	-				-1.8
2,317,181	-				-0.2
2,317,181	-				-1.5
2,317,183	+				+3.1
2,317,196	+				-0.7
2,317,196	+				-1.1
2,317,196	+				-1.6
2,317,196	+				+0.9
2,317,196	+				-0.9
2,317,196	+				+0.3
2,317,196	+				-0.2
2,317,196	+				-0.2
2,317,196	+				+1.0
2,317,196	+				+0.7
2,317,196	+				-0.2
2,317,204	-				+0.5
2,317,204	-				-1.7
2,317,204	-				-1.0
2,317,204	-				+0.2
2,317,204	-				-0.8
2,317,204	-				+0.5
2,317,204	-				-0.7
2,317,365	-		CCNA_02163	0.17	-0.7
2,317,365	-		CCNA_02163	0.17	-0.2
2,317,377	-		CCNA_02163	0.18	+1.5
2,317,382	-		CCNA_02163	0.19	+0.9
2,317,484	+		CCNA_02163	0.31	+2.0
2,317,537	+		CCNA_02163	0.37	-2.0
2,317,559	-		CCNA_02163	0.40	+0.5
2,317,560	-		CCNA_02163	0.40	-1.0
2,317,577	+		CCNA_02163	0.42	-1.4
2,317,583	+		CCNA_02163	0.42	+1.5
2,317,586	-		CCNA_02163	0.43	+0.3
2,317,586	-		CCNA_02163	0.43	+1.5
2,317,617	+		CCNA_02163	0.46	+1.2
2,317,625	-		CCNA_02163	0.47	-0.9
2,317,628	+		CCNA_02163	0.48	-1.1
2,317,636	-		CCNA_02163	0.49	+0.2
2,317,636	-		CCNA_02163	0.49	+0.2
2,317,638	+		CCNA_02163	0.49	-0.7
2,317,655	+		CCNA_02163	0.51	+0.3
2,317,655	+		CCNA_02163	0.51	+1.6
2,317,655	+		CCNA_02163	0.51	-2.4
2,317,690	+		CCNA_02163	0.55	+0.2
2,317,710	+		CCNA_02163	0.57	-0.2
2,317,718	-		CCNA_02163	0.58	-1.9
2,317,746	-		CCNA_02163	0.61	+4.2
2,317,756	-		CCNA_02163	0.62	+1.3
2,317,756	-		CCNA_02163	0.62	+0.0
2,317,756	-		CCNA_02163	0.62	-1.2
2,317,765	-		CCNA_02163	0.64	-0.3
2,317,851	+		CCNA_02163	0.74	-0.9
2,317,857	+		CCNA_02163	0.74	-0.2
2,317,864	+		CCNA_02163	0.75	+1.1
2,317,872	-		CCNA_02163	0.76	-0.7