Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02145

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,302,170	+		CCNA_02143	0.82	+0.5
2,302,178	-		CCNA_02143	0.83	+0.5
2,302,183	-		CCNA_02143	0.84	-1.4
2,302,184	+		CCNA_02143	0.84	-1.7
2,302,216	+		CCNA_02143	0.88	-0.4
2,302,221	+		CCNA_02143	0.88	-0.2
2,302,223	+		CCNA_02143	0.89	+3.5
2,302,224	-		CCNA_02143	0.89	-1.6
2,302,228	+		CCNA_02143	0.89	+0.8
2,302,229	-		CCNA_02143	0.89	-1.9
2,302,259	-				+0.2
2,302,323	-				-2.3
2,302,351	+				-0.1
2,302,359	-				+0.3
2,302,366	+				+2.2
2,302,450	+		CCNA_02144	0.17	+0.4
2,302,456	-		CCNA_02144	0.17	+0.2
2,302,499	-		CCNA_02144	0.23	-1.2
2,302,504	+		CCNA_02144	0.23	+0.9
2,302,529	+		CCNA_02144	0.26	+0.2
2,302,540	-		CCNA_02144	0.28	-1.0
2,302,556	+		CCNA_02144	0.30	+0.5
2,302,556	+		CCNA_02144	0.30	+0.7
2,302,561	+		CCNA_02144	0.30	+1.5
2,302,562	+		CCNA_02144	0.31	+1.1
2,302,562	+		CCNA_02144	0.31	+1.3
2,302,569	-		CCNA_02144	0.31	+0.3
2,302,570	-		CCNA_02144	0.32	+0.2
2,302,570	-		CCNA_02144	0.32	-0.7
2,302,570	-		CCNA_02144	0.32	-2.2
2,302,573	+		CCNA_02144	0.32	+0.4
2,302,573	+		CCNA_02144	0.32	+1.7
2,302,581	-		CCNA_02144	0.33	-0.7
2,302,647	+		CCNA_02144	0.41	+0.9
2,302,647	+		CCNA_02144	0.41	+1.3
2,302,655	-		CCNA_02144	0.42	-1.0
2,302,655	-		CCNA_02144	0.42	-1.7
2,302,711	+		CCNA_02144	0.49	+1.0
2,302,759	-		CCNA_02144	0.55	-0.3
2,302,761	+		CCNA_02144	0.55	-0.3
2,302,808	+		CCNA_02144	0.61	+0.4
2,302,868	+		CCNA_02144	0.69	+0.1
2,302,886	+		CCNA_02144	0.71	-0.0
2,302,894	-		CCNA_02144	0.72	-1.1
2,302,901	+		CCNA_02144	0.73	+1.0
2,302,917	+		CCNA_02144	0.75	+0.8
2,302,925	-		CCNA_02144	0.76	-3.4
2,302,946	+		CCNA_02144	0.78	+0.7
2,302,946	+		CCNA_02144	0.78	+0.7
2,302,957	+		CCNA_02144	0.80	+0.7
2,302,959	-		CCNA_02144	0.80	-0.7
2,302,959	-		CCNA_02144	0.80	-1.9
2,302,959	-		CCNA_02144	0.80	+1.5
2,302,959	-		CCNA_02144	0.80	+0.2
2,302,994	+		CCNA_02144	0.84	+1.1
2,302,996	+		CCNA_02144	0.85	+0.3
2,303,002	-		CCNA_02144	0.85	-1.3
2,303,002	-		CCNA_02144	0.85	-0.1
2,303,034	-		CCNA_02144	0.89	-1.1
2,303,069	+				+2.5
2,303,122	-				+2.5
2,303,123	+				-0.0
2,303,123	+				+0.3
2,303,157	+				+0.7
2,303,197	+				+0.9
2,303,272	-		CCNA_02145	0.19	-0.9
2,303,445	+		CCNA_02145	0.43	+1.5
2,303,452	+		CCNA_02145	0.44	+0.0
2,303,505	-		CCNA_02145	0.51	-1.6
2,303,525	-		CCNA_02145	0.53	+0.9
2,303,525	-		CCNA_02145	0.53	+2.5
2,303,549	-		CCNA_02145	0.57	-0.6
2,303,552	+		CCNA_02145	0.57	+0.8
2,303,577	+		CCNA_02145	0.61	+1.2
2,303,596	+		CCNA_02145	0.63	+0.6
2,303,599	-		CCNA_02145	0.64	+0.1
2,303,621	-		CCNA_02145	0.67	-0.5
2,303,628	-		CCNA_02145	0.67	-0.1
2,303,654	+		CCNA_02145	0.71	+1.4
2,303,664	+		CCNA_02145	0.72	+1.5
2,303,664	+		CCNA_02145	0.72	+1.2
2,303,664	+		CCNA_02145	0.72	+0.3
2,303,672	-		CCNA_02145	0.73	-0.1
2,303,672	-		CCNA_02145	0.73	-0.1
2,303,677	+		CCNA_02145	0.74	+1.8
2,303,690	-		CCNA_02145	0.76	-2.1
2,303,716	+		CCNA_02145	0.79	+1.2
2,303,731	+		CCNA_02145	0.81	+1.3
2,303,734	-		CCNA_02145	0.82	-1.0
2,303,736	-		CCNA_02145	0.82	-2.0
2,303,740	+		CCNA_02145	0.83	+1.6
2,303,767	-		CCNA_02145	0.86	-0.7
2,303,801	+				+1.9
2,303,803	+				+1.1
2,303,803	+				+1.5
2,303,809	-				-1.0
2,303,809	-				-1.8
2,303,813	+				+3.1
2,303,939	+				+4.1
2,303,945	-				-1.4
2,303,954	+				-0.3
2,303,954	+				-1.3
2,303,954	+				-2.8
2,303,973	+				-0.5
2,303,996	+				+0.2
2,304,004	-				-0.6
2,304,004	-				+0.5
2,304,061	-		CCNA_02146	0.17	-2.0
2,304,066	-		CCNA_02146	0.18	-0.6
2,304,076	-		CCNA_02146	0.20	-0.6
2,304,093	+		CCNA_02146	0.24	+0.6
2,304,123	-		CCNA_02146	0.30	-0.2
2,304,135	+		CCNA_02146	0.33	-1.7
2,304,156	-		CCNA_02146	0.37	+0.2
2,304,209	-		CCNA_02146	0.49	-1.3
2,304,246	-		CCNA_02146	0.57	-1.2
2,304,299	-		CCNA_02146	0.68	-0.5
2,304,309	+		CCNA_02146	0.70	-1.5
2,304,317	-		CCNA_02146	0.72	-1.3
2,304,317	-		CCNA_02146	0.72	-1.2
2,304,317	-		CCNA_02146	0.72	+0.9
2,304,349	-		CCNA_02146	0.79	-0.8
2,304,350	+		CCNA_02146	0.79	+0.9
2,304,354	-		CCNA_02146	0.80	-1.0
2,304,358	-		CCNA_02146	0.81	-1.9
2,304,415	+				+1.5
2,304,435	-				-0.9
2,304,493	+				+0.2
2,304,510	+				+3.0
2,304,525	-				-0.5
2,304,525	-				-1.1
2,304,597	+		CCNA_02147	0.15	+0.1
2,304,606	-		CCNA_02147	0.18	+0.2
2,304,611	+		CCNA_02147	0.20	+0.0
2,304,620	+		CCNA_02147	0.22	+0.2
2,304,625	+		CCNA_02147	0.24	-1.0
2,304,625	+		CCNA_02147	0.24	+0.1
2,304,647	+		CCNA_02147	0.31	-1.4
2,304,655	+		CCNA_02147	0.33	-0.7
2,304,663	-		CCNA_02147	0.35	+3.5
2,304,673	-		CCNA_02147	0.38	-1.0
2,304,677	+		CCNA_02147	0.40	-0.6
2,304,685	-		CCNA_02147	0.42	-0.1
2,304,690	+		CCNA_02147	0.44	-0.5
2,304,727	+		CCNA_02147	0.55	-0.3
2,304,759	-		CCNA_02147	0.65	-1.8
2,304,773	+		CCNA_02147	0.69	+0.2
2,304,781	-		CCNA_02147	0.71	+0.5
2,304,787	+		CCNA_02147	0.73	-1.8
2,304,794	-		CCNA_02147	0.75	+2.5
2,304,856	+				-1.8
2,304,856	+				-0.2