Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02131

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,284,457	+		CCNA_02130	0.37	-1.0
2,284,457	+		CCNA_02130	0.37	-0.5
2,284,465	-		CCNA_02130	0.37	-2.3
2,284,487	-		CCNA_02130	0.39	-1.2
2,284,503	-		CCNA_02130	0.40	-1.8
2,284,559	-		CCNA_02130	0.44	-0.8
2,284,581	+		CCNA_02130	0.46	-0.2
2,284,596	+		CCNA_02130	0.47	-1.8
2,284,715	-		CCNA_02130	0.55	-1.8
2,284,730	+		CCNA_02130	0.56	-0.7
2,284,755	+		CCNA_02130	0.58	+0.2
2,284,760	+		CCNA_02130	0.58	-1.4
2,284,762	+		CCNA_02130	0.58	+1.5
2,284,762	+		CCNA_02130	0.58	+0.5
2,284,763	-		CCNA_02130	0.58	-0.1
2,284,763	-		CCNA_02130	0.58	+1.5
2,284,763	-		CCNA_02130	0.58	+0.9
2,284,763	-		CCNA_02130	0.58	-1.7
2,284,770	-		CCNA_02130	0.59	-1.9
2,284,772	+		CCNA_02130	0.59	-2.0
2,284,774	+		CCNA_02130	0.59	-0.5
2,284,781	+		CCNA_02130	0.60	+0.2
2,284,781	+		CCNA_02130	0.60	-2.2
2,284,794	-		CCNA_02130	0.60	-1.7
2,284,794	-		CCNA_02130	0.60	+1.5
2,284,804	-		CCNA_02130	0.61	-0.3
2,284,804	-		CCNA_02130	0.61	-1.0
2,284,820	+		CCNA_02130	0.62	+0.2
2,284,820	+		CCNA_02130	0.62	-2.0
2,284,820	+		CCNA_02130	0.62	-2.1
2,284,828	-		CCNA_02130	0.63	-1.9
2,284,835	+		CCNA_02130	0.63	+0.9
2,284,879	-		CCNA_02130	0.66	-1.6
2,284,913	+		CCNA_02130	0.69	+1.9
2,284,920	+		CCNA_02130	0.69	+4.2
2,284,920	+		CCNA_02130	0.69	+2.8
2,284,921	-		CCNA_02130	0.69	-0.7
2,284,921	-		CCNA_02130	0.69	-1.2
2,284,921	-		CCNA_02130	0.69	+0.2
2,284,921	-		CCNA_02130	0.69	+1.1
2,284,928	-		CCNA_02130	0.70	-1.2
2,284,943	-		CCNA_02130	0.71	-1.5
2,284,945	-		CCNA_02130	0.71	-2.0
2,284,967	-		CCNA_02130	0.73	-1.3
2,285,102	-		CCNA_02130	0.82	-1.6
2,285,137	+		CCNA_02130	0.84	-0.5
2,285,137	+		CCNA_02130	0.84	-1.6
2,285,145	-		CCNA_02130	0.85	-0.8
2,285,145	-		CCNA_02130	0.85	-2.5
2,285,145	-		CCNA_02130	0.85	-0.5
2,285,145	-		CCNA_02130	0.85	+0.9
2,285,225	+				-1.8
2,285,262	-				+0.9
2,285,271	-				-0.5
2,285,274	+				+1.5
2,285,282	-				-1.0
2,285,282	-				-1.2
2,285,282	-				+0.2
2,285,282	-				+0.4
2,285,304	-				-2.1
2,285,304	-				-1.7
2,285,324	-				-1.0
2,285,389	-				+0.9
2,285,389	-				-0.0
2,285,571	+				+2.0
2,285,683	-		CCNA_02131	0.12	-1.6
2,285,724	-		CCNA_02131	0.14	-1.8
2,285,727	+		CCNA_02131	0.14	-1.2
2,285,740	-		CCNA_02131	0.15	-1.8
2,285,740	-		CCNA_02131	0.15	-0.1
2,285,771	-		CCNA_02131	0.16	-1.1
2,285,778	+		CCNA_02131	0.16	-0.1
2,285,786	-		CCNA_02131	0.17	+2.5
2,285,796	-		CCNA_02131	0.17	-0.2
2,285,834	-		CCNA_02131	0.18	-0.5
2,285,904	-		CCNA_02131	0.21	-0.1
2,285,931	+		CCNA_02131	0.22	-0.7
2,285,936	+		CCNA_02131	0.23	-1.0
2,285,936	+		CCNA_02131	0.23	-0.3
2,285,939	-		CCNA_02131	0.23	+1.1
2,285,944	-		CCNA_02131	0.23	-1.3
2,286,016	+		CCNA_02131	0.26	+1.5
2,286,024	-		CCNA_02131	0.26	-2.4
2,286,095	+		CCNA_02131	0.29	-0.1
2,286,103	-		CCNA_02131	0.29	-1.8
2,286,136	-		CCNA_02131	0.31	-2.4
2,286,143	+		CCNA_02131	0.31	-1.3
2,286,143	+		CCNA_02131	0.31	+0.7
2,286,143	+		CCNA_02131	0.31	+2.2
2,286,162	-		CCNA_02131	0.32	+0.2
2,286,213	-		CCNA_02131	0.34	-1.4
2,286,238	-		CCNA_02131	0.35	-1.8
2,286,238	-				+2.5
2,286,245	-		CCNA_02131	0.35	-0.9
2,286,286	+		CCNA_02131	0.37	+0.5
2,286,286	+		CCNA_02131	0.37	+0.2
2,286,457	-		CCNA_02131	0.44	-2.3
2,286,465	-		CCNA_02131	0.44	+0.5
2,286,482	+		CCNA_02131	0.45	+0.6
2,286,611	-		CCNA_02131	0.50	-0.5
2,286,611	-		CCNA_02131	0.50	-2.3
2,286,652	+		CCNA_02131	0.52	-1.8
2,286,675	-		CCNA_02131	0.53	-0.3
2,286,675	-		CCNA_02131	0.53	+0.2
2,286,723	+		CCNA_02131	0.55	-0.7
2,286,733	+				+1.5
2,286,733	+		CCNA_02131	0.55	+0.2
2,286,733	+		CCNA_02131	0.55	-0.1
2,286,733	+		CCNA_02131	0.55	-1.1
2,286,741	-		CCNA_02131	0.55	+0.2
2,286,741	-		CCNA_02131	0.55	-1.1
2,286,743	-		CCNA_02131	0.55	-1.7
2,286,758	-		CCNA_02131	0.56	-0.1
2,286,758	-		CCNA_02131	0.56	-0.1
2,286,775	-		CCNA_02131	0.57	-0.7
2,286,813	+		CCNA_02131	0.58	-0.1
2,286,840	+		CCNA_02131	0.59	-0.5
2,286,847	+		CCNA_02131	0.60	+0.1
2,286,848	-		CCNA_02131	0.60	-2.7
2,286,849	-		CCNA_02131	0.60	-1.0
2,286,851	+		CCNA_02131	0.60	+1.5
2,286,892	-		CCNA_02131	0.61	-2.1
2,286,902	+		CCNA_02131	0.62	+2.5
2,286,939	+		CCNA_02131	0.63	-0.7
2,286,941	+		CCNA_02131	0.63	+1.5
2,287,020	+		CCNA_02131	0.67	-0.1
2,287,023	-		CCNA_02131	0.67	-0.5
2,287,047	-		CCNA_02131	0.68	-3.7
2,287,047	-		CCNA_02131	0.68	+0.9
2,287,180	-		CCNA_02131	0.73	+0.9
2,287,194	-		CCNA_02131	0.74	-0.1
2,287,194	-		CCNA_02131	0.74	+0.4
2,287,224	-		CCNA_02131	0.75	-0.7
2,287,229	-		CCNA_02131	0.75	+0.9
2,287,364	+		CCNA_02131	0.80	-0.3
2,287,399	+		CCNA_02131	0.82	+0.1
2,287,404	+		CCNA_02131	0.82	-0.5
2,287,410	+		CCNA_02131	0.82	-1.1
2,287,412	-		CCNA_02131	0.82	-1.4
2,287,512	-		CCNA_02131	0.86	-0.1
2,287,512	-		CCNA_02131	0.86	-1.3
2,287,557	+		CCNA_02131	0.88	-0.3
2,287,557	+		CCNA_02131	0.88	-1.8
2,287,560	-		CCNA_02131	0.88	+1.2
2,287,570	-		CCNA_02131	0.89	+0.9
2,287,687	+				-0.5
2,287,695	-				+1.5
2,287,695	-				-2.2
2,287,762	+				+1.5
2,287,762	+				-0.3
2,287,766	+				-1.5
2,287,767	+				-1.1
2,287,775	-				+1.5
2,287,780	-				+0.1
2,287,780	-				+1.5
2,287,850	-				-0.7
2,287,891	-				-2.0
2,287,891	-				-1.4
2,287,919	-				-0.5
2,287,955	+				-0.7
2,287,994	+				+3.5
2,288,004	+				+1.6
2,288,004	+				+1.4
2,288,007	-				+0.9
2,288,009	+				+0.1
2,288,012	-				+2.5
2,288,012	-				+2.0
2,288,017	-				-0.6
2,288,056	+				-1.7
2,288,056	+				+0.9
2,288,056	+				-0.6
2,288,056	+				-0.3
2,288,056	+				-0.4
2,288,056	+				-1.1
2,288,056	+				+0.2
2,288,064	-				-0.7
2,288,064	-				+0.1
2,288,064	-				-0.5
2,288,064	-				+1.1
2,288,064	-				-0.9
2,288,064	-				+1.5
2,288,064	-				+0.1
2,288,140	+				+0.2
2,288,305	-		CCNA_02132	0.16	+1.8
2,288,457	-		CCNA_02132	0.31	+0.2
2,288,502	-				+1.9
2,288,502	-		CCNA_02132	0.35	+2.1
2,288,561	-		CCNA_02132	0.41	+2.1
2,288,567	-		CCNA_02132	0.42	-0.7
2,288,572	-		CCNA_02132	0.42	+1.0
2,288,738	-		CCNA_02132	0.58	+2.7
2,288,800	-		CCNA_02132	0.65	+1.7