Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02128

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,280,516	+		CCNA_02127	0.54	-0.4
2,280,523	+		CCNA_02127	0.55	-1.3
2,280,593	+		CCNA_02127	0.59	-1.0
2,280,601	-		CCNA_02127	0.59	+3.6
2,280,612	-		CCNA_02127	0.60	+2.8
2,280,614	+		CCNA_02127	0.60	-0.4
2,280,700	+		CCNA_02127	0.65	-0.2
2,280,708	+		CCNA_02127	0.66	+0.5
2,280,737	+		CCNA_02127	0.67	+0.9
2,280,744	-		CCNA_02127	0.68	+3.4
2,280,773	+		CCNA_02127	0.70	-0.0
2,280,825	-		CCNA_02127	0.73	+2.5
2,280,825	-		CCNA_02127	0.73	+3.2
2,280,825	-		CCNA_02127	0.73	+3.2
2,280,826	-		CCNA_02127	0.73	+3.0
2,280,881	+		CCNA_02127	0.76	+0.9
2,280,881	+		CCNA_02127	0.76	-0.5
2,280,889	-		CCNA_02127	0.77	+1.9
2,280,935	-		CCNA_02127	0.79	+2.0
2,280,970	+		CCNA_02127	0.81	+0.0
2,281,015	+		CCNA_02127	0.84	-0.1
2,281,023	-		CCNA_02127	0.85	+2.5
2,281,035	-		CCNA_02127	0.85	+2.8
2,281,037	+		CCNA_02127	0.85	+0.5
2,281,056	+		CCNA_02127	0.87	+2.5
2,281,056	+		CCNA_02127	0.87	+1.5
2,281,064	-		CCNA_02127	0.87	+2.1
2,281,064	-		CCNA_02127	0.87	+2.7
2,281,071	-		CCNA_02127	0.87	+3.2
2,281,084	+		CCNA_02127	0.88	-0.4
2,281,092	-		CCNA_02127	0.89	+3.2
2,281,125	+				-1.1
2,281,138	+				+0.3
2,281,238	-				+2.8
2,281,258	+				+0.9
2,281,258	+				+0.9
2,281,266	-				+3.6
2,281,284	-				-0.3
2,281,410	-				+0.9
2,281,414	-				-0.2
2,281,435	+				-0.1
2,281,443	+				-0.6
2,281,444	+				-1.0
2,281,452	-				-0.7
2,281,457	-				-1.2
2,281,557	-				-1.5
2,281,585	+		CCNA_02128	0.11	+0.9
2,281,614	+		CCNA_02128	0.13	-1.0
2,281,635	+		CCNA_02128	0.15	-0.5
2,281,635	+		CCNA_02128	0.15	+0.3
2,281,645	+		CCNA_02128	0.16	+0.4
2,281,691	-		CCNA_02128	0.20	+0.9
2,281,691	-		CCNA_02128	0.20	-0.5
2,281,698	-		CCNA_02128	0.20	-1.7
2,281,698	-		CCNA_02128	0.20	-1.7
2,281,724	+		CCNA_02128	0.22	+0.2
2,281,732	-		CCNA_02128	0.23	+0.5
2,281,741	+		CCNA_02128	0.24	+0.2
2,281,741	+		CCNA_02128	0.24	+0.2
2,281,749	-		CCNA_02128	0.25	-0.8
2,281,780	-		CCNA_02128	0.27	+0.3
2,281,838	+		CCNA_02128	0.32	-1.1
2,281,880	+		CCNA_02128	0.35	-1.4
2,281,887	-		CCNA_02128	0.36	-1.0
2,281,910	-		CCNA_02128	0.38	+2.5
2,281,910	-		CCNA_02128	0.38	-0.5
2,281,914	+		CCNA_02128	0.38	-0.2
2,281,914	+		CCNA_02128	0.38	+0.9
2,281,914	+		CCNA_02128	0.38	+0.3
2,281,950	+		CCNA_02128	0.41	-0.8
2,282,065	+		CCNA_02128	0.51	-1.3
2,282,088	+		CCNA_02128	0.53	-2.7
2,282,127	-		CCNA_02128	0.56	-0.8
2,282,139	+		CCNA_02128	0.57	+2.5
2,282,154	-		CCNA_02128	0.58	-1.0
2,282,169	-		CCNA_02128	0.59	-1.8
2,282,174	-		CCNA_02128	0.60	-1.0
2,282,190	+		CCNA_02128	0.61	-0.8
2,282,197	+		CCNA_02128	0.62	-0.3
2,282,209	+		CCNA_02128	0.63	+0.5
2,282,217	-		CCNA_02128	0.63	+1.5
2,282,217	-		CCNA_02128	0.63	+0.2
2,282,233	-		CCNA_02128	0.65	-2.0
2,282,360	+		CCNA_02128	0.75	+0.9
2,282,360	+		CCNA_02128	0.75	-0.3
2,282,417	+				+1.5
2,282,481	+		CCNA_02128	0.85	-1.0
2,282,497	-		CCNA_02128	0.87	+0.2
2,282,503	+		CCNA_02128	0.87	+1.5
2,282,518	+		CCNA_02128	0.88	-1.7
2,282,563	-				-1.2
2,282,602	-				+4.3
2,282,620	+				-1.8
2,282,632	+				-1.6
2,282,640	-				+1.5
2,282,667	+				-0.3
2,282,667	+				-0.7
2,282,706	-				-0.1
2,282,730	-				+1.5
2,282,740	-				+0.5
2,282,757	-				-0.4
2,282,773	+				-1.4
2,282,778	+				+0.5
2,282,810	-				-0.5
2,282,846	+		CCNA_02129	0.10	-0.5
2,282,854	-		CCNA_02129	0.11	-1.0
2,282,875	+		CCNA_02129	0.13	+0.2
2,282,902	-		CCNA_02129	0.15	+1.1
2,282,926	+		CCNA_02129	0.17	-0.1
2,282,926	+		CCNA_02129	0.17	-1.8
2,282,926	+		CCNA_02129	0.17	-0.6
2,282,926	+		CCNA_02129	0.17	-2.0
2,282,934	-		CCNA_02129	0.18	+0.5
2,282,934	-		CCNA_02129	0.18	-0.7
2,282,955	-		CCNA_02129	0.20	+0.3
2,282,955	-		CCNA_02129	0.20	-1.0
2,282,969	+		CCNA_02129	0.21	-1.1
2,282,969	+		CCNA_02129	0.21	-1.4
2,283,057	+		CCNA_02129	0.29	-0.7
2,283,065	-		CCNA_02129	0.29	-2.3
2,283,187	+		CCNA_02129	0.40	-1.6
2,283,202	-		CCNA_02129	0.42	-1.1
2,283,225	+		CCNA_02129	0.44	-0.8
2,283,246	-		CCNA_02129	0.45	-1.8
2,283,251	-		CCNA_02129	0.46	-2.0
2,283,272	-		CCNA_02129	0.48	-0.7
2,283,277	+		CCNA_02129	0.48	+1.5
2,283,278	-		CCNA_02129	0.48	-1.4
2,283,280	-		CCNA_02129	0.48	-1.9
2,283,282	+		CCNA_02129	0.49	-1.1
2,283,290	-		CCNA_02129	0.49	+0.7
2,283,310	-		CCNA_02129	0.51	+0.1
2,283,325	-		CCNA_02129	0.52	-0.9
2,283,328	+		CCNA_02129	0.53	-1.0
2,283,402	-		CCNA_02129	0.59	+0.2
2,283,402	-		CCNA_02129	0.59	-0.4
2,283,405	+		CCNA_02129	0.59	+0.5
2,283,414	+		CCNA_02129	0.60	+0.9
2,283,414	+		CCNA_02129	0.60	+1.0
2,283,414	+		CCNA_02129	0.60	-0.5
2,283,414	+		CCNA_02129	0.60	-0.8
2,283,422	-		CCNA_02129	0.61	-0.5
2,283,422	-		CCNA_02129	0.61	-2.8
2,283,422	-		CCNA_02129	0.61	+1.5
2,283,436	+		CCNA_02129	0.62	-0.5
2,283,437	-		CCNA_02129	0.62	-1.6
2,283,472	+		CCNA_02129	0.65	+0.5
2,283,472	-		CCNA_02129	0.65	+1.5
2,283,505	+		CCNA_02129	0.68	-1.5
2,283,513	-		CCNA_02129	0.69	+0.2
2,283,513	-		CCNA_02129	0.69	+0.9
2,283,513	-		CCNA_02129	0.69	+0.9
2,283,513	-		CCNA_02129	0.69	-0.3
2,283,518	-		CCNA_02129	0.69	+0.5
2,283,518	-		CCNA_02129	0.69	-0.8
2,283,523	-		CCNA_02129	0.70	-1.9
2,283,543	+		CCNA_02129	0.72	+0.8
2,283,547	-		CCNA_02129	0.72	-0.3
2,283,555	+		CCNA_02129	0.73	-1.2
2,283,555	+		CCNA_02129	0.73	-0.8
2,283,563	-		CCNA_02129	0.73	-1.3
2,283,565	+		CCNA_02129	0.74	-1.1
2,283,573	-		CCNA_02129	0.74	+0.9
2,283,573	-		CCNA_02129	0.74	-0.2
2,283,573	-		CCNA_02129	0.74	-2.7
2,283,605	-		CCNA_02129	0.77	+0.2
2,283,649	+		CCNA_02129	0.81	-0.7