Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02109

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,257,306	+		CCNA_02108	0.35	+1.2
2,257,340	-		CCNA_02108	0.38	-0.1
2,257,341	+		CCNA_02108	0.38	-0.7
2,257,349	-		CCNA_02108	0.39	-0.5
2,257,353	+		CCNA_02108	0.39	+0.9
2,257,354	-		CCNA_02108	0.39	-2.7
2,257,381	-		CCNA_02108	0.41	-1.1
2,257,424	-		CCNA_02108	0.44	+0.3
2,257,431	-		CCNA_02108	0.44	+0.2
2,257,432	-		CCNA_02108	0.45	+0.3
2,257,432	-		CCNA_02108	0.45	-0.0
2,257,449	-		CCNA_02108	0.46	-1.6
2,257,505	-		CCNA_02108	0.50	-0.3
2,257,522	+		CCNA_02108	0.51	-1.9
2,257,528	+		CCNA_02108	0.51	+1.2
2,257,530	-		CCNA_02108	0.52	+0.5
2,257,536	-		CCNA_02108	0.52	-1.5
2,257,536	-		CCNA_02108	0.52	+1.2
2,257,547	-		CCNA_02108	0.53	+0.9
2,257,559	+		CCNA_02108	0.54	-0.3
2,257,559	+		CCNA_02108	0.54	+0.2
2,257,567	-		CCNA_02108	0.54	-2.5
2,257,567	-		CCNA_02108	0.54	-2.4
2,257,567	-		CCNA_02108	0.54	-1.9
2,257,591	-		CCNA_02108	0.56	-1.5
2,257,601	+		CCNA_02108	0.57	-0.2
2,257,609	-		CCNA_02108	0.57	-0.3
2,257,609	-		CCNA_02108	0.57	+0.8
2,257,620	+		CCNA_02108	0.58	-1.9
2,257,625	+		CCNA_02108	0.58	+0.2
2,257,628	-		CCNA_02108	0.59	-1.5
2,257,630	+		CCNA_02108	0.59	-0.7
2,257,671	-		CCNA_02108	0.62	-2.1
2,257,697	-		CCNA_02108	0.64	-1.2
2,257,733	+		CCNA_02108	0.66	+0.2
2,257,741	-		CCNA_02108	0.67	-0.7
2,257,759	+		CCNA_02108	0.68	-0.1
2,257,771	+		CCNA_02108	0.69	-0.3
2,257,772	-		CCNA_02108	0.69	-1.2
2,257,928	-		CCNA_02108	0.80	-0.2
2,257,928	-		CCNA_02108	0.80	-1.4
2,257,933	-		CCNA_02108	0.81	-0.7
2,257,958	-		CCNA_02108	0.82	+1.1
2,257,969	-		CCNA_02108	0.83	-0.7
2,258,021	+		CCNA_02108	0.87	-0.3
2,258,021	+		CCNA_02108	0.87	-2.0
2,258,021	+		CCNA_02108	0.87	-0.8
2,258,029	-		CCNA_02108	0.88	+0.8
2,258,029	-		CCNA_02108	0.88	-0.3
2,258,040	+		CCNA_02108	0.88	-0.0
2,258,062	-		CCNA_02108	0.90	-0.2
2,258,082	+				-0.1
2,258,087	+				-1.6
2,258,087	+				+1.5
2,258,087	+				-2.1
2,258,090	-				-1.2
2,258,095	-				-1.2
2,258,095	-				+1.2
2,258,095	-				+0.2
2,258,095	-				+0.2
2,258,135	-				+1.5
2,258,135	-				+0.9
2,258,219	-				+0.8
2,258,278	-				+2.6
2,258,300	-				+3.9
2,258,309	-				+4.3
2,258,313	+				-0.5
2,258,318	+				-1.8
2,258,321	-				+4.1
2,258,326	-				+2.4
2,258,328	+				+0.2
2,258,328	+				+0.9
2,258,328	+				-0.1
2,258,360	+				+0.2
2,258,360	-				+3.4
2,258,385	+				+2.5
2,258,385	+				+2.1
2,258,427	-				+1.5
2,258,431	+				+0.2
2,258,439	-		CCNA_02109	0.10	+2.9
2,258,439	-		CCNA_02109	0.10	+3.8
2,258,594	+		CCNA_02109	0.19	-0.3
2,258,660	+		CCNA_02109	0.22	+0.5
2,258,662	+		CCNA_02109	0.22	+0.9
2,258,721	+		CCNA_02109	0.26	+0.5
2,258,735	-		CCNA_02109	0.26	+0.9
2,258,840	+		CCNA_02109	0.32	+0.2
2,258,892	-		CCNA_02109	0.35	+0.2
2,258,919	+		CCNA_02109	0.36	+0.5
2,258,987	+		CCNA_02109	0.40	+0.9
2,258,995	-		CCNA_02109	0.41	-0.5
2,259,164	+		CCNA_02109	0.50	-0.1
2,259,229	-		CCNA_02109	0.53	+0.9
2,259,235	+		CCNA_02109	0.54	-0.3
2,259,243	-		CCNA_02109	0.54	+1.9
2,259,261	+		CCNA_02109	0.55	+0.5
2,259,342	-		CCNA_02109	0.59	+0.9
2,259,350	-		CCNA_02109	0.60	+0.7
2,259,373	+		CCNA_02109	0.61	+0.5
2,259,381	-		CCNA_02109	0.62	-0.7
2,259,406	+		CCNA_02109	0.63	-0.1
2,259,609	+		CCNA_02109	0.74	+0.9
2,259,619	-		CCNA_02109	0.74	+0.9
2,259,848	-		CCNA_02109	0.87	+2.1
2,259,890	-		CCNA_02109	0.89	+0.9
2,260,099	+				+0.9
2,260,099	+				+0.2
2,260,099	+				+0.2
2,260,099	+				-1.4
2,260,106	+				-0.7
2,260,106	+				+1.5
2,260,114	-				+1.0
2,260,114	-				+0.6
2,260,174	+				+1.2
2,260,239	-				+3.0
2,260,258	-				+1.0
2,260,268	-				+0.7
2,260,276	-				+0.1
2,260,295	+				-2.6
2,260,295	+				+0.2
2,260,295	+				-1.7
2,260,295	+				-0.1
2,260,295	+				+1.5
2,260,303	-				+3.4
2,260,303	-				+3.1
2,260,303	-				+2.5
2,260,363	+		CCNA_02110	0.10	-1.6
2,260,373	+		CCNA_02110	0.12	+0.9
2,260,373	+		CCNA_02110	0.12	+1.9
2,260,381	-		CCNA_02110	0.14	-0.2
2,260,396	-		CCNA_02110	0.18	+1.4
2,260,405	-		CCNA_02110	0.20	+1.2
2,260,442	-		CCNA_02110	0.28	-0.3
2,260,442	-		CCNA_02110	0.28	+0.5
2,260,476	-		CCNA_02110	0.36	-0.7
2,260,541	-		CCNA_02110	0.52	-0.4
2,260,643	+		CCNA_02110	0.75	+0.7
2,260,643	+		CCNA_02110	0.75	+1.5
2,260,643	+		CCNA_02110	0.75	+0.9
2,260,643	+		CCNA_02110	0.75	-0.9
2,260,651	-		CCNA_02110	0.77	+2.5
2,260,651	-		CCNA_02110	0.77	-1.1
2,260,679	-		CCNA_02110	0.84	-0.6
2,260,684	-		CCNA_02110	0.85	-1.0
2,260,714	-				-1.7
2,260,751	-				-2.5
2,260,756	-				-0.8
2,260,767	-				-0.4
2,260,773	+				-1.1
2,260,789	+				+0.5
2,260,796	-				-2.3
2,260,841	-		CCNA_02111	0.15	+0.9
2,260,883	-		CCNA_02111	0.22	-2.1
2,260,936	-		CCNA_02111	0.32	-0.9
2,260,948	+		CCNA_02111	0.34	-0.7
2,260,956	-		CCNA_02111	0.35	-0.7
2,260,956	-		CCNA_02111	0.35	-0.1
2,260,970	-		CCNA_02111	0.38	-1.7
2,260,981	+		CCNA_02111	0.40	+1.5
2,261,007	+		CCNA_02111	0.45	-1.2
2,261,025	-		CCNA_02111	0.48	+2.2