Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02049

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,195,891	+		CCNA_02048	0.59	+1.8
2,195,891	+		CCNA_02048	0.59	+2.1
2,195,891	+		CCNA_02048	0.59	+1.1
2,195,891	+		CCNA_02048	0.59	+0.8
2,195,891	+		CCNA_02048	0.59	+2.5
2,195,891	+		CCNA_02048	0.59	+0.7
2,195,896	+		CCNA_02048	0.59	+1.4
2,195,899	-		CCNA_02048	0.59	-0.4
2,195,899	-		CCNA_02048	0.59	+0.6
2,195,920	-		CCNA_02048	0.60	+2.6
2,195,924	+		CCNA_02048	0.61	+2.0
2,195,939	-		CCNA_02048	0.61	+0.3
2,195,970	+		CCNA_02048	0.63	-0.3
2,195,977	+		CCNA_02048	0.63	-0.2
2,195,993	+		CCNA_02048	0.64	+0.5
2,196,001	-		CCNA_02048	0.64	-0.6
2,196,001	-		CCNA_02048	0.64	-0.4
2,196,015	-		CCNA_02048	0.65	+0.6
2,196,021	+		CCNA_02048	0.65	+2.0
2,196,043	-		CCNA_02048	0.66	+1.0
2,196,083	+		CCNA_02048	0.68	+1.9
2,196,101	+		CCNA_02048	0.69	+2.0
2,196,123	-		CCNA_02048	0.70	-1.1
2,196,124	+		CCNA_02048	0.70	+1.4
2,196,135	+		CCNA_02048	0.70	+1.9
2,196,178	-		CCNA_02048	0.72	+0.0
2,196,183	+		CCNA_02048	0.72	+3.4
2,196,191	-		CCNA_02048	0.73	+1.0
2,196,191	-		CCNA_02048	0.73	+0.3
2,196,207	+		CCNA_02048	0.74	+2.2
2,196,239	+		CCNA_02048	0.75	+1.9
2,196,259	-		CCNA_02048	0.76	-1.2
2,196,285	+		CCNA_02048	0.77	+1.8
2,196,285	+		CCNA_02048	0.77	+1.4
2,196,405	-		CCNA_02048	0.83	+1.6
2,196,408	+		CCNA_02048	0.83	+2.9
2,196,410	+		CCNA_02048	0.83	+1.4
2,196,418	-		CCNA_02048	0.83	-1.4
2,196,420	+		CCNA_02048	0.83	+2.4
2,196,427	-		CCNA_02048	0.84	-1.7
2,196,432	+		CCNA_02048	0.84	+1.5
2,196,432	+		CCNA_02048	0.84	+2.0
2,196,432	+		CCNA_02048	0.84	+1.7
2,196,432	+		CCNA_02048	0.84	+1.7
2,196,437	+		CCNA_02048	0.84	+2.9
2,196,437	+		CCNA_02048	0.84	+1.0
2,196,437	+		CCNA_02048	0.84	+2.0
2,196,440	-		CCNA_02048	0.84	+0.2
2,196,445	-		CCNA_02048	0.85	+0.8
2,196,465	+		CCNA_02048	0.85	+2.3
2,196,467	+		CCNA_02048	0.86	+2.2
2,196,467	+		CCNA_02048	0.86	+2.1
2,196,475	-		CCNA_02048	0.86	+0.8
2,196,499	+		CCNA_02048	0.87	+1.6
2,196,504	+		CCNA_02048	0.87	+2.7
2,196,522	+		CCNA_02048	0.88	+1.7
2,196,522	-		CCNA_02048	0.88	+2.6
2,196,538	+		CCNA_02048	0.89	+1.9
2,196,546	+		CCNA_02048	0.89	+2.4
2,196,546	+		CCNA_02048	0.89	+2.9
2,196,546	+		CCNA_02048	0.89	+1.8
2,196,546	+		CCNA_02048	0.89	+3.1
2,196,546	+		CCNA_02048	0.89	+2.6
2,196,546	+		CCNA_02048	0.89	+2.5
2,196,551	+		CCNA_02048	0.89	+2.2
2,196,551	+		CCNA_02048	0.89	+2.5
2,196,551	+		CCNA_02048	0.89	+2.3
2,196,554	-		CCNA_02048	0.90	+0.6
2,196,554	-		CCNA_02048	0.90	-1.3
2,196,556	+		CCNA_02048	0.90	+2.4
2,196,556	+		CCNA_02048	0.90	+0.6
2,196,556	+		CCNA_02048	0.90	+2.0
2,196,556	+		CCNA_02048	0.90	+2.1
2,196,556	+		CCNA_02048	0.90	+3.3
2,196,556	+		CCNA_02048	0.90	+2.1
2,196,556	+		CCNA_02048	0.90	+1.6
2,196,556	+		CCNA_02048	0.90	+1.7
2,196,559	-		CCNA_02048	0.90	+3.6
2,196,561	+		CCNA_02048	0.90	+0.3
2,196,564	-		CCNA_02048	0.90	+1.0
2,196,564	-		CCNA_02048	0.90	-1.2
2,196,564	-		CCNA_02048	0.90	+1.0
2,196,564	-		CCNA_02048	0.90	-0.4
2,196,564	-		CCNA_02048	0.90	+1.0
2,196,564	-		CCNA_02048	0.90	+1.0
2,196,571	-				+0.3
2,196,586	-				-0.7
2,196,615	+				+3.0
2,196,624	-				+0.6
2,196,624	-				-0.6
2,196,626	+				+2.8
2,196,695	+				+3.3
2,196,711	-				-0.4
2,196,713	-				-0.4
2,196,776	+				+2.9
2,196,776	+				+2.7
2,196,784	-				-0.2
2,196,784	-				-0.6
2,196,804	+				+4.2
2,196,894	+				+1.4
2,196,902	-		CCNA_02049	0.11	-0.2
2,196,902	-		CCNA_02049	0.11	-0.0
2,196,910	-		CCNA_02049	0.13	+0.2
2,196,965	-		CCNA_02049	0.27	-0.7
2,196,995	+		CCNA_02049	0.34	-2.3
2,196,996	+		CCNA_02049	0.34	+1.0
2,196,996	+		CCNA_02049	0.34	+0.9
2,197,004	-		CCNA_02049	0.36	-1.1
2,197,004	-		CCNA_02049	0.36	+0.8
2,197,020	+		CCNA_02049	0.40	+0.0
2,197,021	+		CCNA_02049	0.41	-0.4
2,197,031	+		CCNA_02049	0.43	+1.6
2,197,039	-		CCNA_02049	0.45	-1.0
2,197,044	-		CCNA_02049	0.46	+1.3
2,197,055	+		CCNA_02049	0.49	+1.5
2,197,062	-		CCNA_02049	0.51	-1.8
2,197,121	-		CCNA_02049	0.66	-1.2
2,197,151	+		CCNA_02049	0.73	+0.8
2,197,151	-		CCNA_02049	0.73	+1.4
2,197,250	+				-1.5
2,197,358	-				+1.0
2,197,404	+				-0.5
2,197,412	-				+0.6
2,197,412	-				+2.6
2,197,412	-				-1.8
2,197,412	-				-2.4
2,197,462	+				+1.0
2,197,476	+				-1.5
2,197,484	-				+0.0
2,197,484	-				-1.3
2,197,537	-				-1.4
2,197,537	-				-0.1
2,197,553	+				-1.9
2,197,553	+				+1.7
2,197,556	-				-1.9
2,197,565	+				-0.6
2,197,571	+				+0.7
2,197,572	+		CCNA_02050	0.10	+0.6
2,197,572	+		CCNA_02050	0.10	-0.8
2,197,579	-		CCNA_02050	0.10	+0.3
2,197,609	+		CCNA_02050	0.13	+1.4
2,197,651	+		CCNA_02050	0.15	+1.3
2,197,656	+		CCNA_02050	0.16	+0.3
2,197,749	-		CCNA_02050	0.22	-0.9
2,197,764	-		CCNA_02050	0.23	-0.2
2,197,774	-		CCNA_02050	0.24	-0.1
2,197,786	-		CCNA_02050	0.25	-0.9
2,197,796	+		CCNA_02050	0.25	-1.5
2,197,827	-		CCNA_02050	0.27	-0.8
2,197,888	-		CCNA_02050	0.31	-1.4
2,197,888	-		CCNA_02050	0.31	+1.0
2,197,890	+		CCNA_02050	0.32	+0.3
2,197,895	+		CCNA_02050	0.32	-1.3
2,197,895	+		CCNA_02050	0.32	+1.2
2,197,895	+		CCNA_02050	0.32	+1.5
2,197,895	+		CCNA_02050	0.32	-0.2
2,197,895	+		CCNA_02050	0.32	+1.1
2,197,895	+		CCNA_02050	0.32	-1.8
2,197,895	+		CCNA_02050	0.32	+1.5
2,197,895	+		CCNA_02050	0.32	+1.6
2,197,895	+		CCNA_02050	0.32	+1.2
2,197,895	+		CCNA_02050	0.32	+2.2
2,197,895	+		CCNA_02050	0.32	+0.6
2,197,895	+		CCNA_02050	0.32	+1.0
2,197,895	+		CCNA_02050	0.32	+1.1
2,197,895	+		CCNA_02050	0.32	+0.3
2,197,898	-		CCNA_02050	0.32	-0.6
2,197,898	-		CCNA_02050	0.32	+0.6
2,197,898	-		CCNA_02050	0.32	+0.6
2,197,903	-		CCNA_02050	0.33	-0.3
2,197,903	-		CCNA_02050	0.33	-0.4
2,197,903	-		CCNA_02050	0.33	+0.6
2,197,903	-		CCNA_02050	0.33	+0.3
2,197,903	-		CCNA_02050	0.33	-0.2
2,197,903	-		CCNA_02050	0.33	+0.8
2,197,903	-		CCNA_02050	0.33	+1.6
2,197,903	-		CCNA_02050	0.33	-1.2
2,197,903	-		CCNA_02050	0.33	-1.2
2,197,940	-		CCNA_02050	0.35	-1.0
2,197,940	-		CCNA_02050	0.35	+1.6
2,197,959	+		CCNA_02050	0.36	-0.1
2,198,057	+		CCNA_02050	0.43	+3.1
2,198,069	+		CCNA_02050	0.44	+0.2
2,198,077	+		CCNA_02050	0.44	+1.6
2,198,077	+		CCNA_02050	0.44	+0.3
2,198,102	+		CCNA_02050	0.46	+0.1
2,198,110	-		CCNA_02050	0.47	-0.9
2,198,110	-		CCNA_02050	0.47	-0.4
2,198,119	-		CCNA_02050	0.47	-0.2
2,198,122	+		CCNA_02050	0.47	+1.7
2,198,175	+		CCNA_02050	0.51	-0.3
2,198,222	+		CCNA_02050	0.54	+1.6
2,198,246	-		CCNA_02050	0.56	+0.6