Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01870

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,007,867	+		CCNA_01869	0.70	-1.5
2,007,872	+		CCNA_01869	0.70	-0.5
2,007,892	+		CCNA_01869	0.71	+0.2
2,007,916	-		CCNA_01869	0.72	+2.8
2,007,916	-		CCNA_01869	0.72	+0.5
2,007,916	-		CCNA_01869	0.72	+1.2
2,008,027	+		CCNA_01869	0.76	-0.2
2,008,060	+		CCNA_01869	0.77	-1.2
2,008,091	+		CCNA_01869	0.78	-0.5
2,008,091	+		CCNA_01869	0.78	-1.2
2,008,100	-		CCNA_01869	0.79	+1.8
2,008,130	-		CCNA_01869	0.80	+0.2
2,008,146	-		CCNA_01869	0.80	+0.5
2,008,155	+		CCNA_01869	0.81	+0.8
2,008,182	+		CCNA_01869	0.82	-2.2
2,008,226	+		CCNA_01869	0.83	+0.8
2,008,305	+		CCNA_01869	0.86	-0.4
2,008,313	-		CCNA_01869	0.87	-1.0
2,008,352	-		CCNA_01869	0.88	+0.8
2,008,352	-		CCNA_01869	0.88	+1.8
2,008,456	+				+0.8
2,008,460	-				+1.2
2,008,509	-				+1.5
2,008,519	-				-2.0
2,008,597	-				+0.5
2,008,610	+				-0.0
2,008,616	-				-0.8
2,008,616	-				+1.8
2,008,618	-				-0.2
2,008,681	+				-0.4
2,008,681	+				+1.2
2,008,681	+				+1.8
2,008,688	+				+0.8
2,008,689	-				+0.5
2,008,689	-				-0.5
2,008,689	-				-0.7
2,008,738	+				-0.4
2,008,738	+				+0.3
2,008,746	-				-1.3
2,008,746	-				-1.7
2,008,770	-				-1.0
2,008,804	+				+0.2
2,008,810	-				+0.5
2,008,810	-				+0.5
2,008,865	-				-0.2
2,009,167	+		CCNA_01870	0.34	-1.3
2,009,182	+		CCNA_01870	0.35	-1.4
2,009,221	+		CCNA_01870	0.38	-0.4
2,009,229	-		CCNA_01870	0.39	+1.8
2,009,239	+		CCNA_01870	0.40	-1.1
2,009,247	-		CCNA_01870	0.40	-0.4
2,009,255	+		CCNA_01870	0.41	+0.8
2,009,255	+		CCNA_01870	0.41	-0.0
2,009,255	+		CCNA_01870	0.41	+0.8
2,009,255	+		CCNA_01870	0.41	+1.2
2,009,255	+		CCNA_01870	0.41	-1.5
2,009,255	+		CCNA_01870	0.41	-0.4
2,009,263	-		CCNA_01870	0.42	-0.0
2,009,263	-		CCNA_01870	0.42	-1.4
2,009,270	+		CCNA_01870	0.42	-0.7
2,009,289	-		CCNA_01870	0.44	+0.1
2,009,290	-		CCNA_01870	0.44	-1.7
2,009,299	-		CCNA_01870	0.45	-1.5
2,009,302	-		CCNA_01870	0.45	-0.0
2,009,304	-		CCNA_01870	0.45	-0.0
2,009,350	-		CCNA_01870	0.49	+1.2
2,009,352	+		CCNA_01870	0.50	-0.7
2,009,353	+		CCNA_01870	0.50	+1.2
2,009,361	-		CCNA_01870	0.50	-0.4
2,009,361	-		CCNA_01870	0.50	+0.1
2,009,371	-		CCNA_01870	0.51	-2.0
2,009,371	-		CCNA_01870	0.51	+0.1
2,009,408	-		CCNA_01870	0.54	-0.4
2,009,417	+		CCNA_01870	0.55	+1.2
2,009,417	+		CCNA_01870	0.55	+0.8
2,009,417	+		CCNA_01870	0.55	-0.4
2,009,431	+		CCNA_01870	0.56	-0.2
2,009,431	+				+0.8
2,009,431	+		CCNA_01870	0.56	+0.2
2,009,439	-		CCNA_01870	0.57	-0.2
2,009,446	-		CCNA_01870	0.58	+1.2
2,009,473	+		CCNA_01870	0.60	+1.2
2,009,544	-		CCNA_01870	0.66	+0.2
2,009,561	+		CCNA_01870	0.68	+0.8
2,009,569	-		CCNA_01870	0.68	-1.4
2,009,708	+		CCNA_01870	0.80	-0.9
2,009,817	+		CCNA_01870	0.90	+0.8
2,009,817	+		CCNA_01870	0.90	+0.8
2,009,817	+		CCNA_01870	0.90	+0.6
2,009,825	-				-0.8
2,009,825	-				-0.5
2,009,825	-				+1.4
2,009,825	-				-1.0
2,009,836	+				-0.5
2,009,865	+				-0.0
2,009,873	-				-0.0
2,009,880	+				-1.0
2,009,886	-				-0.7
2,009,888	-				+0.8
2,009,904	+				-0.2
2,009,912	-				+2.8
2,009,935	+				-1.4
2,009,942	+				-1.3
2,009,943	-				-0.4
2,009,951	-				-0.8
2,009,983	-		CCNA_03895	0.10	-0.2
2,009,996	-		CCNA_03895	0.15	+0.8
2,010,002	+		CCNA_03895	0.17	-0.2
2,010,010	-		CCNA_03895	0.20	-0.8
2,010,010	-		CCNA_03895	0.20	-0.5
2,010,081	+		CCNA_03895	0.46	-0.0
2,010,106	+		CCNA_03895	0.54	-0.8
2,010,114	-		CCNA_03895	0.57	+0.8
2,010,114	-		CCNA_03895	0.57	-1.7
2,010,114	-		CCNA_03895	0.57	-0.4
2,010,176	+		CCNA_03895	0.80	+0.2
2,010,248	+				+0.2
2,010,256	-				+0.2
2,010,256	-				+0.2
2,010,276	-		CCNA_01873	0.15	-1.4
2,010,308	+		CCNA_01873	0.29	+1.8
2,010,331	-		CCNA_01873	0.38	+1.8
2,010,361	-		CCNA_01873	0.51	+0.5
2,010,437	+		CCNA_01873	0.84	-0.8
2,010,468	-				-0.5
2,010,468	-				+0.5
2,010,475	-				-1.2
2,010,490	-				+0.5
2,010,521	-				+2.0
2,010,571	+				+2.8
2,010,613	-				+1.2
2,010,621	-				+1.8
2,010,633	-				-1.0
2,010,703	-				-2.4
2,010,703	-				+0.8
2,010,713	-				-0.0
2,010,732	-				-0.4