Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01862

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,995,971	+		CCNA_01861	0.57	-2.2
1,995,971	+		CCNA_01861	0.57	+0.2
1,995,979	-		CCNA_01861	0.58	+0.8
1,996,001	+		CCNA_01861	0.59	+3.8
1,996,001	+		CCNA_01861	0.59	+4.1
1,996,001	+		CCNA_01861	0.59	+4.4
1,996,002	-		CCNA_01861	0.60	+1.8
1,996,079	-		CCNA_01861	0.66	-0.9
1,996,089	-		CCNA_01861	0.67	+0.5
1,996,090	+		CCNA_01861	0.67	+0.0
1,996,098	-		CCNA_01861	0.68	-0.2
1,996,185	+		CCNA_01861	0.75	-1.0
1,996,195	+		CCNA_01861	0.76	-0.6
1,996,196	+		CCNA_01861	0.76	+0.4
1,996,204	-		CCNA_01861	0.76	+0.8
1,996,204	-		CCNA_01861	0.76	+0.8
1,996,206	+		CCNA_01861	0.77	-1.6
1,996,206	+		CCNA_01861	0.77	+1.8
1,996,229	+		CCNA_01861	0.79	-0.4
1,996,229	+		CCNA_01861	0.79	+0.0
1,996,229	+		CCNA_01861	0.79	-1.9
1,996,239	-		CCNA_01861	0.79	+0.7
1,996,254	-		CCNA_01861	0.81	+0.8
1,996,254	-		CCNA_01861	0.81	-0.2
1,996,257	+		CCNA_01861	0.81	-0.4
1,996,274	+		CCNA_01861	0.82	+2.8
1,996,343	+		CCNA_01861	0.88	+0.1
1,996,354	-		CCNA_01861	0.89	+0.8
1,996,389	+				+0.8
1,996,457	+				-0.1
1,996,465	-				+2.8
1,996,478	+				+1.2
1,996,486	-				+0.5
1,996,488	+				-0.7
1,996,518	-				+0.5
1,996,564	-				+1.2
1,996,606	+				+0.8
1,996,614	-				-0.3
1,996,614	-				+0.2
1,996,634	+				+0.9
1,996,634	-				+0.8
1,996,634	-				-1.9
1,996,669	+				-0.3
1,996,669	+				+0.2
1,996,669	+				-0.9
1,996,669	+				+2.8
1,996,671	+				-1.4
1,996,672	-				+1.0
1,996,672	-				+0.9
1,996,677	-				+1.8
1,996,677	-				-0.9
1,996,704	+				-1.6
1,996,712	-				+1.2
1,996,762	+				-1.3
1,996,763	-				+0.5
1,996,850	-				+0.3
1,996,866	+				-0.6
1,996,874	-				+1.2
1,996,899	+				+0.5
1,996,902	-				-0.2
1,996,907	-				+0.8
1,996,907	-				+0.5
1,996,939	-		CCNA_01862	0.16	-0.2
1,996,940	-		CCNA_01862	0.17	+1.2
1,997,001	+		CCNA_01862	0.37	-0.9
1,997,002	-		CCNA_01862	0.38	-0.9
1,997,007	-		CCNA_01862	0.39	-0.5
1,997,017	-		CCNA_01862	0.43	-1.3
1,997,055	+		CCNA_01862	0.56	+0.2
1,997,118	-		CCNA_01862	0.77	-2.0
1,997,167	+				+0.1
1,997,202	+				+1.8
1,997,258	+				-0.8
1,997,258	+				-0.2
1,997,266	-				+1.2
1,997,308	+				+1.8
1,997,315	+				+0.0
1,997,363	+		CCNA_01863	0.12	+0.2
1,997,382	-		CCNA_01863	0.13	+0.2
1,997,382	-		CCNA_01863	0.13	-0.2
1,997,407	+		CCNA_01863	0.15	+0.0
1,997,407	+		CCNA_01863	0.15	-0.3
1,997,407	+		CCNA_01863	0.15	+2.8
1,997,415	-		CCNA_01863	0.15	-0.3
1,997,415	-		CCNA_01863	0.15	-1.1
1,997,415	-		CCNA_01863	0.15	+0.2
1,997,415	-		CCNA_01863	0.15	+1.0
1,997,417	-		CCNA_01863	0.16	-1.0
1,997,428	-		CCNA_01863	0.16	+0.8
1,997,432	-		CCNA_01863	0.17	-1.9
1,997,442	-		CCNA_01863	0.17	-0.5
1,997,475	-		CCNA_01863	0.20	+2.8
1,997,486	-		CCNA_01863	0.20	+0.8
1,997,519	+		CCNA_01863	0.23	-1.8
1,997,519	+		CCNA_01863	0.23	-2.9
1,997,519	+		CCNA_01863	0.23	+0.3
1,997,527	-		CCNA_01863	0.23	-0.2
1,997,546	+		CCNA_01863	0.24	+0.1
1,997,568	+		CCNA_01863	0.26	-0.2
1,997,569	+		CCNA_01863	0.26	+1.5
1,997,584	+		CCNA_01863	0.27	-1.4
1,997,641	-		CCNA_01863	0.31	+1.0
1,997,658	+				+1.8
1,997,666	-		CCNA_01863	0.33	+1.2
1,997,692	-		CCNA_01863	0.35	-1.3
1,997,746	-		CCNA_01863	0.38	+0.2
1,997,807	+		CCNA_01863	0.43	+1.2
1,997,817	+		CCNA_01863	0.43	-1.2
1,997,825	-		CCNA_01863	0.44	+0.5
1,997,831	+		CCNA_01863	0.44	+0.2
1,997,831	+		CCNA_01863	0.44	-0.2
1,997,839	-		CCNA_01863	0.45	+0.8
1,997,839	-		CCNA_01863	0.45	+1.0
1,997,839	-		CCNA_01863	0.45	+0.7
1,997,839	-		CCNA_01863	0.45	+1.8
1,997,864	-		CCNA_01863	0.47	+0.2
1,997,889	+		CCNA_01863	0.48	-0.5
1,997,914	+		CCNA_01863	0.50	-0.9
1,997,914	+		CCNA_01863	0.50	-0.6
1,997,916	-		CCNA_01863	0.50	-2.0
1,997,919	+		CCNA_01863	0.50	-1.3
1,997,922	-		CCNA_01863	0.51	-1.0
1,997,922	-		CCNA_01863	0.51	-2.7
1,997,922	-		CCNA_01863	0.51	+1.2
1,997,922	-		CCNA_01863	0.51	-1.3
1,997,922	-		CCNA_01863	0.51	+0.5
1,997,924	+		CCNA_01863	0.51	+0.0
1,997,927	-		CCNA_01863	0.51	-1.6
1,997,990	+		CCNA_01863	0.55	+0.0
1,997,998	-		CCNA_01863	0.56	-0.4
1,998,011	+		CCNA_01863	0.57	+1.1
1,998,011	+		CCNA_01863	0.57	-0.4
1,998,053	-		CCNA_01863	0.60	-0.2
1,998,053	-		CCNA_01863	0.60	-1.4
1,998,113	+		CCNA_01863	0.64	-0.8
1,998,118	+		CCNA_01863	0.64	+0.0
1,998,139	+		CCNA_01863	0.66	+0.8
1,998,139	+		CCNA_01863	0.66	+0.5
1,998,139	+		CCNA_01863	0.66	+1.2