Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01845

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,976,153	-				-0.6
1,976,153	-				-0.6
1,976,153	-				-0.5
1,976,163	-				-0.3
1,976,183	-				+0.3
1,976,183	-				+1.3
1,976,191	+				+0.1
1,976,307	-		CCNA_01844	0.21	+2.9
1,976,325	-		CCNA_01844	0.24	+0.3
1,976,325	-		CCNA_01844	0.24	+0.5
1,976,325	-		CCNA_01844	0.24	-1.8
1,976,332	+		CCNA_01844	0.25	+0.9
1,976,348	+		CCNA_01844	0.27	-0.3
1,976,364	-		CCNA_01844	0.30	+0.2
1,976,400	-		CCNA_01844	0.36	+0.9
1,976,409	+		CCNA_01844	0.37	-0.7
1,976,484	-		CCNA_01844	0.49	-1.4
1,976,484	-		CCNA_01844	0.49	+1.9
1,976,517	-		CCNA_01844	0.54	+0.5
1,976,531	+		CCNA_01844	0.56	+0.3
1,976,541	+		CCNA_01844	0.58	-0.1
1,976,564	-		CCNA_01844	0.62	-0.3
1,976,625	-		CCNA_01844	0.71	-1.1
1,976,625	-		CCNA_01844	0.71	-0.1
1,976,626	-		CCNA_01844	0.72	-0.1
1,976,633	-		CCNA_01844	0.73	-1.2
1,976,633	-		CCNA_01844	0.73	+2.3
1,976,649	+		CCNA_01844	0.75	+0.9
1,976,674	-		CCNA_01844	0.79	-0.7
1,976,729	-		CCNA_01844	0.88	-0.1
1,976,734	+		CCNA_01844	0.89	+2.9
1,976,734	+		CCNA_01844	0.89	-0.1
1,976,777	-				+1.3
1,976,810	-				+1.9
1,976,810	-				-2.2
1,976,831	+				-1.8
1,976,837	-				-0.9
1,976,849	+				-1.1
1,976,851	-				-0.1
1,976,862	-				-1.1
1,976,864	+				+0.1
1,976,892	-				+2.9
1,976,924	+				-0.5
1,976,929	+				+1.4
1,976,950	-				+0.9
1,976,971	+				-1.3
1,977,050	-				+0.0
1,977,084	-				-0.7
1,977,123	+				-0.9
1,977,123	+				+1.9
1,977,131	-				+1.3
1,977,131	-				+0.1
1,977,139	-				-0.3
1,977,153	+		CCNA_01845	0.13	+1.9
1,977,190	+		CCNA_01845	0.19	-1.6
1,977,212	+		CCNA_01845	0.24	-0.6
1,977,256	+		CCNA_01845	0.32	+0.5
1,977,294	+		CCNA_01845	0.39	+1.3
1,977,302	-		CCNA_01845	0.40	+0.9
1,977,303	+		CCNA_01845	0.41	-0.7
1,977,329	-		CCNA_01845	0.46	+1.9
1,977,391	+		CCNA_01845	0.57	+0.1
1,977,399	-		CCNA_01845	0.59	-0.6
1,977,423	-		CCNA_01845	0.63	+0.4
1,977,425	+		CCNA_01845	0.63	-0.9
1,977,425	+		CCNA_01845	0.63	+1.5
1,977,433	-		CCNA_01845	0.65	-1.9
1,977,433	-		CCNA_01845	0.65	+0.1
1,977,433	-		CCNA_01845	0.65	-1.7
1,977,433	-		CCNA_01845	0.65	-0.1
1,977,433	-		CCNA_01845	0.65	-1.7
1,977,448	+		CCNA_01845	0.68	-0.9
1,977,456	-		CCNA_01845	0.69	-0.3
1,977,475	+		CCNA_01845	0.73	+0.3
1,977,506	+		CCNA_01845	0.79	-0.6
1,977,513	-		CCNA_01845	0.80	-1.3
1,977,529	+		CCNA_01845	0.83	-1.2
1,977,636	-				+0.8
1,977,718	+				-0.5
1,977,724	-				-1.7
1,977,754	+		CCNA_01846	0.11	+0.5
1,977,761	+		CCNA_01846	0.11	-0.8
1,977,761	+		CCNA_01846	0.11	+2.9
1,977,771	+		CCNA_01846	0.12	+1.3
1,977,771	+		CCNA_01846	0.12	+0.5
1,977,771	+		CCNA_01846	0.12	-0.3
1,977,777	-		CCNA_01846	0.12	+1.3
1,977,779	-		CCNA_01846	0.12	+0.9
1,977,779	-		CCNA_01846	0.12	+0.9
1,977,800	-				+1.3
1,977,817	+		CCNA_01846	0.15	-1.9
1,977,838	+		CCNA_01846	0.17	+0.9
1,977,846	-		CCNA_01846	0.17	-0.9
1,977,872	+		CCNA_01846	0.19	-1.3
1,977,880	-		CCNA_01846	0.20	-0.8
1,977,893	+		CCNA_01846	0.21	-0.5
1,977,893	+		CCNA_01846	0.21	+0.1
1,977,901	-		CCNA_01846	0.21	-0.8
1,977,906	+		CCNA_01846	0.22	+1.9
1,977,906	+		CCNA_01846	0.22	+0.9
1,977,906	+		CCNA_01846	0.22	+0.3
1,977,914	-		CCNA_01846	0.22	+0.9
1,977,914	-		CCNA_01846	0.22	-0.9
1,977,918	+		CCNA_01846	0.23	+0.5
1,977,929	+		CCNA_01846	0.24	+1.9
1,977,964	-		CCNA_01846	0.26	-1.5
1,978,028	-		CCNA_01846	0.31	+0.6
1,978,028	-		CCNA_01846	0.31	+0.9
1,978,051	+		CCNA_01846	0.33	-1.4
1,978,057	+		CCNA_01846	0.33	-0.4
1,978,070	-		CCNA_01846	0.34	-0.5
1,978,072	-		CCNA_01846	0.34	-0.6
1,978,107	+		CCNA_01846	0.37	-1.7
1,978,115	+		CCNA_01846	0.37	-1.2
1,978,121	-		CCNA_01846	0.38	+0.1
1,978,146	+		CCNA_01846	0.40	-0.3
1,978,151	-		CCNA_01846	0.40	-1.0
1,978,166	-		CCNA_01846	0.41	+0.7
1,978,171	-		CCNA_01846	0.41	+0.3
1,978,190	-		CCNA_01846	0.43	-0.1
1,978,222	-		CCNA_01846	0.45	+1.9
1,978,224	+		CCNA_01846	0.45	+0.1
1,978,226	+		CCNA_01846	0.46	+0.5
1,978,231	+		CCNA_01846	0.46	+1.6
1,978,234	-		CCNA_01846	0.46	+2.3
1,978,290	-		CCNA_01846	0.50	-0.1
1,978,292	+		CCNA_01846	0.50	-1.4
1,978,315	-		CCNA_01846	0.52	-0.8
1,978,336	-		CCNA_01846	0.54	-0.3
1,978,343	+		CCNA_01846	0.54	+0.2
1,978,346	-		CCNA_01846	0.54	-1.5
1,978,348	+		CCNA_01846	0.55	+1.9
1,978,351	-		CCNA_01846	0.55	-0.5
1,978,356	-				+2.9
1,978,450	-		CCNA_01846	0.62	-1.4
1,978,452	-		CCNA_01846	0.62	+1.7
1,978,474	+		CCNA_01846	0.64	+1.3
1,978,479	+		CCNA_01846	0.64	-0.6
1,978,556	+		CCNA_01846	0.70	+1.3
1,978,579	-		CCNA_01846	0.72	-0.6