Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01802
Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | PYE with nitrite 5 mM |
---|---|---|---|---|---|
remove | |||||
1,926,435 | + | CCNA_01801 | 0.20 | +0.3 | |
1,926,613 | - | CCNA_01801 | 0.60 | +1.3 | |
1,926,626 | + | CCNA_01801 | 0.62 | +3.5 | |
1,926,631 | + | CCNA_01801 | 0.64 | +2.9 | |
1,926,631 | + | +1.9 | |||
1,926,631 | + | CCNA_01801 | 0.64 | +1.4 | |
1,926,631 | + | CCNA_01801 | 0.64 | +2.6 | |
1,926,656 | + | CCNA_01801 | 0.69 | +2.3 | |
1,926,689 | - | CCNA_01801 | 0.76 | +1.3 | |
1,926,694 | + | CCNA_01801 | 0.77 | +2.5 | |
1,926,699 | + | CCNA_01801 | 0.79 | +2.7 | |
1,926,704 | + | CCNA_01801 | 0.80 | +3.0 | |
1,926,733 | - | CCNA_01801 | 0.86 | -0.8 | |
1,926,738 | + | CCNA_01801 | 0.87 | +2.5 | |
1,926,739 | + | CCNA_01801 | 0.87 | +2.7 | |
1,926,771 | + | +2.9 | |||
1,926,771 | + | +2.9 | |||
1,926,779 | - | +1.9 | |||
1,926,801 | + | +2.3 | |||
1,926,819 | - | CCNA_01802 | 0.23 | +2.9 | |
1,926,819 | - | CCNA_01802 | 0.23 | -0.4 | |
1,926,819 | - | CCNA_01802 | 0.23 | -0.3 | |
1,926,838 | + | CCNA_01802 | 0.39 | +1.7 | |
1,926,838 | + | CCNA_01802 | 0.39 | +2.6 | |
1,926,884 | + | CCNA_01802 | 0.79 | +2.2 |
Or see this region's nucleotide sequence