Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01781

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,907,555	+		CCNA_01780	0.40	+0.3
1,907,563	-		CCNA_01780	0.41	+2.3
1,907,648	+		CCNA_01780	0.46	+1.2
1,907,656	-		CCNA_01780	0.47	+2.9
1,907,661	-				+1.9
1,907,694	+		CCNA_01780	0.49	+2.0
1,907,705	+		CCNA_01780	0.50	+1.5
1,907,713	-		CCNA_01780	0.51	+2.8
1,907,737	+		CCNA_01780	0.52	+0.3
1,907,737	+		CCNA_01780	0.52	-0.1
1,907,748	+		CCNA_01780	0.53	+0.7
1,907,809	-		CCNA_01780	0.57	+2.9
1,907,814	+		CCNA_01780	0.57	+1.7
1,907,822	-		CCNA_01780	0.58	+2.5
1,907,879	+		CCNA_01780	0.62	-1.3
1,907,955	+		CCNA_01780	0.67	+0.9
1,907,957	-		CCNA_01780	0.67	+1.7
1,908,009	+		CCNA_01780	0.70	+3.7
1,908,018	+		CCNA_01780	0.71	+2.1
1,908,026	-		CCNA_01780	0.71	+3.0
1,908,031	-		CCNA_01780	0.72	+3.9
1,908,037	-		CCNA_01780	0.72	+3.8
1,908,042	-		CCNA_01780	0.73	+2.9
1,908,083	-		CCNA_01780	0.75	+3.8
1,908,100	+		CCNA_01780	0.76	+1.9
1,908,183	-		CCNA_01780	0.82	+3.3
1,908,215	+		CCNA_01780	0.84	+1.5
1,908,235	+		CCNA_01780	0.85	+2.9
1,908,235	+		CCNA_01780	0.85	+0.9
1,908,235	+		CCNA_01780	0.85	+2.0
1,908,235	+		CCNA_01780	0.85	+1.2
1,908,235	+		CCNA_01780	0.85	+1.7
1,908,243	-		CCNA_01780	0.86	+3.4
1,908,243	-		CCNA_01780	0.86	+3.5
1,908,243	-		CCNA_01780	0.86	+1.3
1,908,243	-		CCNA_01780	0.86	+3.1
1,908,253	-		CCNA_01780	0.87	+2.4
1,908,253	-		CCNA_01780	0.87	+3.3
1,908,305	+				+1.3
1,908,313	-				+3.1
1,908,364	-				+3.4
1,908,364	-				+2.5
1,908,372	+				+0.9
1,908,390	-				+2.8
1,908,390	-				+2.0
1,908,402	+				+1.3
1,908,457	-				+0.2
1,908,468	-				+0.8
1,908,521	+				+0.9
1,908,562	+				+0.5
1,908,575	-				+1.3
1,908,649	+		CCNA_01781	0.27	-0.4
1,908,649	+		CCNA_01781	0.27	-0.1
1,908,652	-		CCNA_01781	0.27	-0.1
1,908,654	+		CCNA_01781	0.28	-0.6
1,908,656	+		CCNA_01781	0.28	-1.7
1,908,671	-		CCNA_01781	0.32	-0.6
1,908,671	-		CCNA_01781	0.32	+1.9
1,908,737	-		CCNA_01781	0.49	+2.3
1,908,762	-		CCNA_01781	0.55	-0.8
1,908,767	+		CCNA_01781	0.56	-0.4
1,908,767	+		CCNA_01781	0.56	+1.1
1,908,767	+		CCNA_01781	0.56	+0.9
1,908,768	-		CCNA_01781	0.57	-1.8
1,908,825	-		CCNA_01781	0.71	-2.5
1,908,841	+		CCNA_01781	0.75	+2.9
1,908,841	+		CCNA_01781	0.75	+0.1
1,908,849	-		CCNA_01781	0.77	-1.4
1,908,849	-		CCNA_01781	0.77	+0.7
1,908,849	-		CCNA_01781	0.77	-1.2
1,908,939	-				+1.0
1,908,997	-				-0.5
1,908,997	-				-1.1
1,909,078	-				+1.9
1,909,115	-				-1.0
1,909,120	+				-0.6
1,909,128	-				-0.7
1,909,146	+				-0.1
1,909,245	-		CCNA_01782	0.14	+0.6
1,909,258	+		CCNA_01782	0.15	-0.1
1,909,263	+		CCNA_01782	0.15	+1.3
1,909,271	-		CCNA_01782	0.15	-0.3
1,909,271	-		CCNA_01782	0.15	-2.9
1,909,271	-		CCNA_01782	0.15	+2.9
1,909,335	-		CCNA_01782	0.18	+0.3
1,909,341	-		CCNA_01782	0.18	+0.9
1,909,350	-		CCNA_01782	0.19	+0.6
1,909,423	+		CCNA_01782	0.22	+0.3
1,909,423	+		CCNA_01782	0.22	+0.1
1,909,423	+		CCNA_01782	0.22	+1.3
1,909,423	+		CCNA_01782	0.22	-0.3
1,909,423	+		CCNA_01782	0.22	+2.9
1,909,423	+		CCNA_01782	0.22	+2.9
1,909,423	+		CCNA_01782	0.22	+0.6
1,909,431	-		CCNA_01782	0.22	+0.3
1,909,431	-		CCNA_01782	0.22	+1.3
1,909,431	-		CCNA_01782	0.22	+0.9
1,909,431	-		CCNA_01782	0.22	-0.9
1,909,431	-		CCNA_01782	0.22	+0.3
1,909,431	-		CCNA_01782	0.22	+0.9
1,909,431	-		CCNA_01782	0.22	+0.9
1,909,431	-		CCNA_01782	0.22	-1.2
1,909,431	-		CCNA_01782	0.22	+0.6
1,909,431	-		CCNA_01782	0.22	-0.3
1,909,431	-		CCNA_01782	0.22	+1.6
1,909,431	-		CCNA_01782	0.22	-1.2
1,909,431	-		CCNA_01782	0.22	-0.6
1,909,431	-		CCNA_01782	0.22	+0.6
1,909,431	-		CCNA_01782	0.22	-0.6
1,909,438	+		CCNA_01782	0.23	-1.2
1,909,438	+		CCNA_01782	0.23	+1.9
1,909,444	-		CCNA_01782	0.23	-0.4
1,909,446	-		CCNA_01782	0.23	-1.1
1,909,546	-		CCNA_01782	0.28	+0.1
1,909,546	-		CCNA_01782	0.28	-0.6
1,909,643	-		CCNA_01782	0.32	-0.1
1,909,659	-		CCNA_01782	0.33	-0.1
1,909,661	+		CCNA_01782	0.33	-1.8
1,909,661	+		CCNA_01782	0.33	+0.3
1,909,661	-		CCNA_01782	0.33	-1.3
1,909,669	-		CCNA_01782	0.33	-0.5
1,909,669	-		CCNA_01782	0.33	-0.0
1,909,669	-		CCNA_01782	0.33	+1.5
1,909,669	-		CCNA_01782	0.33	-1.2
1,909,672	+				+1.9
1,909,680	-		CCNA_01782	0.34	-0.4
1,909,680	-		CCNA_01782	0.34	-0.1
1,909,681	-		CCNA_01782	0.34	+0.6
1,909,726	-		CCNA_01782	0.36	+1.3
1,909,733	+		CCNA_01782	0.36	+1.3
1,909,749	-		CCNA_01782	0.37	-0.8
1,909,756	+		CCNA_01782	0.37	+2.9
1,909,756	+		CCNA_01782	0.37	-0.7
1,909,764	-		CCNA_01782	0.37	-2.3
1,909,778	-		CCNA_01782	0.38	-0.8
1,909,814	-		CCNA_01782	0.40	-0.1
1,909,820	+		CCNA_01782	0.40	+2.9
1,909,893	-		CCNA_01782	0.43	+0.3
1,909,925	-		CCNA_01782	0.45	+0.3