Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01696

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,825,803	+		CCNA_01695	0.73	-1.0
1,825,818	+		CCNA_01695	0.73	-1.4
1,825,833	+		CCNA_01695	0.74	+1.3
1,825,843	+		CCNA_01695	0.74	-0.9
1,825,851	-		CCNA_01695	0.75	+1.1
1,825,914	+		CCNA_01695	0.77	+2.9
1,825,989	-		CCNA_01695	0.79	+1.9
1,826,029	-		CCNA_01695	0.81	-0.7
1,826,035	-		CCNA_01695	0.81	+0.6
1,826,120	+		CCNA_01695	0.84	-0.8
1,826,128	-		CCNA_01695	0.84	-0.6
1,826,149	+		CCNA_01695	0.85	+1.1
1,826,212	+		CCNA_01695	0.87	+0.1
1,826,394	-				+0.3
1,826,442	-				+0.6
1,826,444	-				-0.8
1,826,497	+				-1.2
1,826,497	+				-1.6
1,826,512	-				-0.9
1,826,525	-				+0.9
1,826,553	+				-1.1
1,826,557	+				+0.6
1,826,574	+				-0.6
1,826,591	-				-0.3
1,826,613	-				-0.3
1,826,645	-				+2.3
1,826,694	-				-0.1
1,826,695	-				+0.3
1,826,695	-				+1.9
1,826,701	-				-0.6
1,826,763	+				+0.1
1,826,771	-				+1.5
1,826,803	+				-0.6
1,826,820	+				+0.3
1,826,823	+				+0.3
1,826,867	-				-2.4
1,826,870	+				+1.3
1,826,889	-				+0.6
1,826,908	+				-0.4
1,826,923	-				-0.3
1,826,923	-				+0.6
1,826,926	+				+0.2
1,826,926	+				-0.3
1,826,934	-				+0.9
1,826,969	+		CCNA_01696	0.10	-1.6
1,826,987	-		CCNA_01696	0.12	+0.2
1,826,988	-		CCNA_01696	0.12	+1.5
1,827,111	-		CCNA_01696	0.19	+0.9
1,827,140	-		CCNA_01696	0.21	-0.7
1,827,150	+		CCNA_01696	0.21	+0.6
1,827,150	-		CCNA_01696	0.21	-1.9
1,827,194	+		CCNA_01696	0.24	-0.1
1,827,202	-		CCNA_01696	0.24	-0.6
1,827,204	+		CCNA_01696	0.24	+0.1
1,827,204	+		CCNA_01696	0.24	+1.9
1,827,204	+		CCNA_01696	0.24	-0.6
1,827,204	+		CCNA_01696	0.24	+0.6
1,827,212	-		CCNA_01696	0.25	+0.9
1,827,212	-		CCNA_01696	0.25	+0.1
1,827,212	-		CCNA_01696	0.25	+1.3
1,827,247	-		CCNA_01696	0.27	-0.7
1,827,275	+		CCNA_01696	0.29	+0.3
1,827,325	+		CCNA_01696	0.32	+0.9
1,827,340	-		CCNA_01696	0.33	-1.6
1,827,351	+		CCNA_01696	0.33	-0.6
1,827,407	+		CCNA_01696	0.37	-2.3
1,827,411	+		CCNA_01696	0.37	+1.9
1,827,433	+		CCNA_01696	0.38	-0.8
1,827,445	+		CCNA_01696	0.39	+0.1
1,827,477	+		CCNA_01696	0.41	-1.5
1,827,487	+		CCNA_01696	0.41	-2.1
1,827,511	+		CCNA_01696	0.43	-0.9
1,827,511	-		CCNA_01696	0.43	+0.1
1,827,519	-		CCNA_01696	0.43	+0.1
1,827,519	-		CCNA_01696	0.43	+0.6
1,827,536	-		CCNA_01696	0.44	-0.8
1,827,545	-		CCNA_01696	0.45	-0.6
1,827,545	-		CCNA_01696	0.45	+2.9
1,827,577	-		CCNA_01696	0.47	-1.4
1,827,606	+		CCNA_01696	0.48	+0.3
1,827,674	-		CCNA_01696	0.52	+0.3
1,827,712	+		CCNA_01696	0.55	-1.5
1,827,762	-		CCNA_01696	0.58	+2.4
1,827,804	-		CCNA_01696	0.60	-0.7
1,827,857	-		CCNA_01696	0.63	+2.9
1,827,873	-		CCNA_01696	0.64	-1.5
1,827,899	+		CCNA_01696	0.66	-0.8
1,827,899	+		CCNA_01696	0.66	-1.4
1,827,904	+		CCNA_01696	0.66	+0.3
1,827,907	-		CCNA_01696	0.66	+0.3
1,827,907	-		CCNA_01696	0.66	+2.9
1,827,907	-		CCNA_01696	0.66	+1.6
1,827,907	-		CCNA_01696	0.66	-1.8
1,827,927	+		CCNA_01696	0.68	+0.9
1,827,935	-		CCNA_01696	0.68	-0.7
1,827,935	-		CCNA_01696	0.68	+0.6
1,827,988	+		CCNA_01696	0.71	+1.3
1,827,988	+		CCNA_01696	0.71	-1.3
1,827,988	+		CCNA_01696	0.71	-0.1
1,827,988	+		CCNA_01696	0.71	-1.4
1,827,988	+		CCNA_01696	0.71	+0.9
1,827,996	-		CCNA_01696	0.72	+1.9
1,827,998	+		CCNA_01696	0.72	-0.3
1,828,001	-		CCNA_01696	0.72	-1.0
1,828,047	-		CCNA_01696	0.75	+0.6
1,828,054	-		CCNA_01696	0.75	+0.9
1,828,162	+		CCNA_01696	0.82	-0.8
1,828,175	+		CCNA_01696	0.82	-0.4
1,828,175	+		CCNA_01696	0.82	+0.1
1,828,183	+		CCNA_01696	0.83	-0.1
1,828,183	-		CCNA_01696	0.83	-0.6
1,828,183	-		CCNA_01696	0.83	+0.6
1,828,191	-		CCNA_01696	0.83	+0.3
1,828,201	+				+2.9
1,828,202	-		CCNA_01696	0.84	-1.1
1,828,216	+		CCNA_01696	0.85	+0.9
1,828,219	-		CCNA_01696	0.85	-0.7
1,828,219	-		CCNA_01696	0.85	-0.6
1,828,228	+		CCNA_01696	0.86	-2.4
1,828,241	-		CCNA_01696	0.86	-0.3
1,828,288	+		CCNA_01696	0.89	-0.3
1,828,344	+				+0.1
1,828,352	-				-1.0
1,828,352	-				+0.1
1,828,413	+				+0.6
1,828,424	-				-0.8
1,828,428	+				+0.9
1,828,430	+				-1.3
1,828,430	+				-0.6
1,828,440	-				+0.3
1,828,495	+				-0.9
1,828,503	-				+0.9
1,828,517	+				-0.4
1,828,517	+				-1.0
1,828,525	-				+1.9
1,828,564	+				-0.3
1,828,572	-				+0.9
1,828,588	+				-0.9
1,828,602	-				+1.9
1,828,609	+				+0.9
1,828,642	+		CCNA_01697	0.11	-0.3
1,828,644	+		CCNA_01697	0.11	-1.0
1,828,693	+		CCNA_01697	0.15	+0.3
1,828,693	+		CCNA_01697	0.15	+0.6
1,828,701	-		CCNA_01697	0.16	-0.3
1,828,701	-		CCNA_01697	0.16	+0.6
1,828,701	-		CCNA_01697	0.16	-1.0
1,828,769	+		CCNA_01697	0.22	-1.5
1,828,769	+		CCNA_01697	0.22	+0.3
1,828,769	+		CCNA_01697	0.22	-1.4
1,828,777	-		CCNA_01697	0.23	-1.0
1,828,778	+		CCNA_01697	0.23	+1.9
1,828,818	+		CCNA_01697	0.26	+1.4
1,828,857	+		CCNA_01697	0.30	-0.3
1,828,857	+		CCNA_01697	0.30	+0.3
1,828,865	-		CCNA_01697	0.31	-0.4
1,828,870	-		CCNA_01697	0.31	-0.8
1,828,966	-		CCNA_01697	0.40	-0.4
1,829,012	-		CCNA_01697	0.44	-1.9
1,829,034	+		CCNA_01697	0.46	+1.7
1,829,071	+		CCNA_01697	0.49	-0.3
1,829,109	-		CCNA_01697	0.52	-0.7
1,829,158	+		CCNA_01697	0.57	-0.5
1,829,171	-		CCNA_01697	0.58	-1.8
1,829,192	-		CCNA_01697	0.60	-1.2
1,829,217	+		CCNA_01697	0.62	+0.9
1,829,225	-		CCNA_01697	0.63	-0.1
1,829,249	+		CCNA_01697	0.65	-0.7
1,829,273	-		CCNA_01697	0.67	+0.2
1,829,290	-		CCNA_01697	0.68	-0.4
1,829,290	-		CCNA_01697	0.68	+1.3
1,829,295	-		CCNA_01697	0.69	+0.6
1,829,325	+		CCNA_01697	0.72	+1.9
1,829,325	+		CCNA_01697	0.72	+0.3
1,829,333	-		CCNA_01697	0.72	+0.3
1,829,333	-		CCNA_01697	0.72	-0.7
1,829,338	-		CCNA_01697	0.73	+2.9
1,829,343	-		CCNA_01697	0.73	-0.3
1,829,361	-		CCNA_01697	0.75	+2.3
1,829,410	+		CCNA_01697	0.79	-1.9