Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01679

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,805,131	+				+2.5
1,805,145	+				+3.1
1,805,199	-		CCNA_01678	0.14	-1.5
1,805,234	-		CCNA_01678	0.17	-0.6
1,805,236	-		CCNA_01678	0.18	-0.9
1,805,242	-		CCNA_01678	0.18	+0.8
1,805,266	+		CCNA_01678	0.21	+2.1
1,805,266	+		CCNA_01678	0.21	+3.1
1,805,266	+		CCNA_01678	0.21	+2.7
1,805,266	+		CCNA_01678	0.21	+2.6
1,805,273	-		CCNA_01678	0.21	-0.7
1,805,299	+		CCNA_01678	0.24	+2.3
1,805,357	+		CCNA_01678	0.30	+2.5
1,805,422	-		CCNA_01678	0.36	+0.8
1,805,465	-		CCNA_01678	0.40	-0.4
1,805,499	+		CCNA_01678	0.44	+3.2
1,805,504	+		CCNA_01678	0.44	+2.5
1,805,632	+		CCNA_01678	0.57	+3.3
1,805,645	-		CCNA_01678	0.58	-0.7
1,805,691	+		CCNA_01678	0.63	+1.6
1,805,696	+		CCNA_01678	0.63	+3.2
1,805,718	-		CCNA_01678	0.66	+0.3
1,805,751	+		CCNA_01678	0.69	+2.7
1,805,780	-		CCNA_01678	0.72	+0.5
1,805,799	+		CCNA_01678	0.74	+1.9
1,805,814	+		CCNA_01678	0.75	+3.1
1,805,822	-		CCNA_01678	0.76	+0.5
1,805,830	+		CCNA_01678	0.77	+3.3
1,805,830	+		CCNA_01678	0.77	+3.0
1,805,830	+		CCNA_01678	0.77	+2.2
1,805,830	+		CCNA_01678	0.77	+3.1
1,805,830	+		CCNA_01678	0.77	+2.8
1,805,838	-		CCNA_01678	0.78	+1.3
1,805,957	-		CCNA_01678	0.89	-0.2
1,805,971	+				+2.7
1,806,020	+				+3.3
1,806,032	-				-0.6
1,806,046	-				+0.5
1,806,051	+				+1.3
1,806,065	-				-0.1
1,806,099	+				+3.1
1,806,099	+				+0.7
1,806,099	+				+2.3
1,806,106	+				+0.7
1,806,107	-				-0.6
1,806,111	+				+1.7
1,806,111	+				+1.6
1,806,111	+				+1.1
1,806,111	+				+0.5
1,806,111	+				+1.5
1,806,119	-				-1.3
1,806,119	-				-1.1
1,806,119	-				-1.9
1,806,131	+				+1.9
1,806,146	-				-1.5
1,806,204	+				+2.0
1,806,204	+				+1.5
1,806,204	+				+3.9
1,806,265	-		CCNA_01679	0.14	-0.3
1,806,280	-		CCNA_01679	0.15	+0.1
1,806,344	+		CCNA_01679	0.19	+1.1
1,806,344	+		CCNA_01679	0.19	+1.8
1,806,349	+		CCNA_01679	0.20	+2.9
1,806,352	-		CCNA_01679	0.20	-0.8
1,806,445	-		CCNA_01679	0.26	+2.9
1,806,561	+		CCNA_01679	0.34	+1.9
1,806,563	+		CCNA_01679	0.34	+2.6
1,806,563	+		CCNA_01679	0.34	+2.8
1,806,571	-		CCNA_01679	0.35	+0.3
1,806,612	+		CCNA_01679	0.38	+2.2
1,806,649	+		CCNA_01679	0.40	+2.2
1,806,652	-		CCNA_01679	0.41	-0.1
1,806,705	+		CCNA_01679	0.44	+2.0
1,806,792	-		CCNA_01679	0.50	-1.5
1,807,013	+		CCNA_01679	0.65	+1.3
1,807,054	+		CCNA_01679	0.68	+1.6
1,807,113	+		CCNA_01679	0.72	+0.9
1,807,113	+		CCNA_01679	0.72	+2.4
1,807,113	+		CCNA_01679	0.72	+2.9
1,807,113	+		CCNA_01679	0.72	+2.2
1,807,113	+		CCNA_01679	0.72	+2.1
1,807,121	-		CCNA_01679	0.73	-1.3
1,807,121	-		CCNA_01679	0.73	+0.9
1,807,121	-		CCNA_01679	0.73	-0.1
1,807,158	+		CCNA_01679	0.75	+3.3
1,807,369	+		CCNA_01679	0.90	+2.4
1,807,369	+		CCNA_01679	0.90	+2.2
1,807,369	+		CCNA_01679	0.90	+2.3
1,807,377	-				+1.9
1,807,377	-				+1.1
1,807,377	-				+1.3
1,807,386	+				+1.8
1,807,397	-				+1.3
1,807,442	-				+0.8
1,807,539	+				+1.8
1,807,549	+				+0.5
1,807,549	+				+2.0
1,807,549	+				+2.0
1,807,549	+				+1.8
1,807,557	-				+0.9
1,807,564	+				+2.1
1,807,564	+				+2.1
1,807,564	+				+2.2
1,807,572	-				-0.6
1,807,572	-				-0.5
1,807,572	-				+0.4
1,807,628	-				-0.5
1,807,676	+		CCNA_01680	0.12	+2.5
1,807,676	+		CCNA_01680	0.12	+2.3
1,807,695	-		CCNA_01680	0.13	+1.9
1,807,721	+		CCNA_01680	0.15	+1.4
1,807,769	+		CCNA_01680	0.19	+1.8
1,807,834	-		CCNA_01680	0.24	+0.9
1,807,909	+		CCNA_01680	0.29	+1.9
1,807,932	+		CCNA_01680	0.31	+1.0
1,807,932	+		CCNA_01680	0.31	+0.8
1,807,932	+		CCNA_01680	0.31	+1.3
1,807,977	-		CCNA_01680	0.35	-1.0
1,808,038	+		CCNA_01680	0.39	+1.6
1,808,059	+		CCNA_01680	0.41	+1.1
1,808,059	+		CCNA_01680	0.41	+1.1
1,808,059	+		CCNA_01680	0.41	+2.5
1,808,113	+		CCNA_01680	0.45	+2.2
1,808,251	+		CCNA_01680	0.55	+2.1
1,808,265	+		CCNA_01680	0.56	+2.2
1,808,271	+		CCNA_01680	0.56	+2.6
1,808,314	-		CCNA_01680	0.60	-0.9
1,808,335	+		CCNA_01680	0.61	+1.8
1,808,359	+		CCNA_01680	0.63	+1.5
1,808,368	+		CCNA_01680	0.64	+1.1
1,808,398	+		CCNA_01680	0.66	+3.1
1,808,466	+		CCNA_01680	0.71	+1.8
1,808,479	-		CCNA_01680	0.72	-0.7