Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01671

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,792,581	+		CCNA_01670	0.13	+1.3
1,792,637	+		CCNA_01670	0.18	+0.5
1,792,702	-		CCNA_01670	0.25	-1.2
1,792,704	+		CCNA_01670	0.25	+0.4
1,792,704	+		CCNA_01670	0.25	+0.1
1,792,808	+		CCNA_01670	0.35	-0.5
1,792,870	-		CCNA_01670	0.41	-0.5
1,792,872	+		CCNA_01670	0.41	+3.5
1,792,989	-		CCNA_01670	0.53	-0.5
1,793,003	+		CCNA_01670	0.54	+0.5
1,793,044	-		CCNA_01670	0.58	-1.0
1,793,074	+		CCNA_01670	0.61	-1.2
1,793,074	+		CCNA_01670	0.61	+0.3
1,793,084	-		CCNA_01670	0.62	-0.2
1,793,108	+		CCNA_01670	0.65	-1.5
1,793,118	+		CCNA_01670	0.65	-1.7
1,793,118	+		CCNA_01670	0.65	-0.9
1,793,118	+		CCNA_01670	0.65	-1.1
1,793,126	-		CCNA_01670	0.66	-1.1
1,793,126	-		CCNA_01670	0.66	+1.3
1,793,126	-		CCNA_01670	0.66	-1.6
1,793,140	+		CCNA_01670	0.68	-0.4
1,793,182	+		CCNA_01670	0.72	-0.7
1,793,182	-		CCNA_01670	0.72	+3.9
1,793,195	-		CCNA_01670	0.73	+0.3
1,793,215	+		CCNA_01670	0.75	+1.6
1,793,224	+		CCNA_01670	0.76	+0.8
1,793,260	+		CCNA_01670	0.79	+0.5
1,793,297	-		CCNA_01670	0.83	-0.7
1,793,328	+		CCNA_01670	0.86	+0.5
1,793,328	+		CCNA_01670	0.86	-0.3
1,793,328	+		CCNA_01670	0.86	-0.3
1,793,328	+		CCNA_01670	0.86	-0.7
1,793,328	+		CCNA_01670	0.86	-1.1
1,793,328	+		CCNA_01670	0.86	+1.0
1,793,328	+		CCNA_01670	0.86	+0.3
1,793,336	-		CCNA_01670	0.87	+2.8
1,793,336	-		CCNA_01670	0.87	+0.3
1,793,336	-		CCNA_01670	0.87	-0.3
1,793,388	-				-0.2
1,793,404	+				+0.5
1,793,412	-				-1.6
1,793,412	-				-0.5
1,793,428	+				-1.3
1,793,436	-				-0.6
1,793,436	-				+1.8
1,793,455	-				+1.2
1,793,457	-				+0.8
1,793,457	-				-0.8
1,793,464	+				-1.6
1,793,519	+				-1.0
1,793,529	+				+0.0
1,793,582	+				-0.6
1,793,584	-				+0.2
1,793,687	-		CCNA_01671	0.32	-0.5
1,793,687	-		CCNA_01671	0.32	+1.2
1,793,691	+		CCNA_01671	0.33	-0.5
1,793,741	-		CCNA_01671	0.47	-0.2
1,793,820	+		CCNA_01671	0.69	-0.3
1,794,009	+				+1.3
1,794,017	-				-1.9
1,794,066	-				-0.2
1,794,068	-				+0.0
1,794,068	-				-0.5
1,794,070	+				+2.8
1,794,070	+				+0.5
1,794,163	+		CCNA_01672	0.14	+0.5
1,794,200	+		CCNA_01672	0.17	+1.2
1,794,202	+		CCNA_01672	0.18	-0.2
1,794,202	+		CCNA_01672	0.18	+0.0
1,794,227	-		CCNA_01672	0.20	-0.3
1,794,227	-		CCNA_01672	0.20	-0.6
1,794,236	+		CCNA_01672	0.21	+0.8
1,794,236	+		CCNA_01672	0.21	+1.2
1,794,244	-		CCNA_01672	0.22	+0.4
1,794,284	-		CCNA_01672	0.26	-0.3
1,794,292	+		CCNA_01672	0.27	+1.8
1,794,292	+		CCNA_01672	0.27	+1.8
1,794,300	-		CCNA_01672	0.28	-1.4
1,794,300	-		CCNA_01672	0.28	+1.8
1,794,321	-		CCNA_01672	0.30	+0.0
1,794,333	+		CCNA_01672	0.31	-1.1
1,794,333	+		CCNA_01672	0.31	-0.9
1,794,335	-		CCNA_01672	0.31	+0.8
1,794,338	+		CCNA_01672	0.32	-0.5
1,794,341	-		CCNA_01672	0.32	-0.2
1,794,341	-		CCNA_01672	0.32	-1.1
1,794,341	-		CCNA_01672	0.32	-1.5
1,794,346	-		CCNA_01672	0.32	+1.2
1,794,346	-		CCNA_01672	0.32	-0.2
1,794,346	-		CCNA_01672	0.32	-0.5
1,794,346	-		CCNA_01672	0.32	-0.2
1,794,346	-		CCNA_01672	0.32	+1.8
1,794,373	+		CCNA_01672	0.35	+1.2
1,794,389	-		CCNA_01672	0.37	+0.1
1,794,418	-		CCNA_01672	0.40	-0.7
1,794,427	-		CCNA_01672	0.41	+1.2
1,794,487	+		CCNA_01672	0.47	+1.8
1,794,543	+		CCNA_01672	0.53	+0.2
1,794,586	-		CCNA_01672	0.57	-0.8
1,794,635	+		CCNA_01672	0.62	+0.5
1,794,736	+		CCNA_01672	0.72	-0.2
1,794,800	-		CCNA_01672	0.79	-1.1
1,794,849	+		CCNA_01672	0.84	+0.8
1,794,862	-				+2.8
1,794,875	+		CCNA_01672	0.87	+1.2
1,794,883	-		CCNA_01672	0.87	+0.8