Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01645

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,764,671	-				+0.7
1,764,673	+				-0.8
1,764,738	+				-0.5
1,764,748	+		CCNA_01644	0.10	-1.7
1,764,753	+		CCNA_01644	0.11	+0.5
1,764,756	-		CCNA_01644	0.11	+1.6
1,764,761	-		CCNA_01644	0.12	+1.5
1,764,761	-		CCNA_01644	0.12	+1.0
1,764,796	+		CCNA_01644	0.16	-1.3
1,764,885	+		CCNA_01644	0.26	-0.9
1,764,922	-		CCNA_01644	0.30	+1.3
1,764,922	-		CCNA_01644	0.30	+1.1
1,764,933	+		CCNA_01644	0.31	+3.2
1,764,950	+		CCNA_01644	0.33	-1.3
1,764,978	-		CCNA_01644	0.36	+1.7
1,765,010	+		CCNA_01644	0.39	+0.8
1,765,012	+		CCNA_01644	0.40	+0.5
1,765,036	+		CCNA_01644	0.42	+1.8
1,765,064	-		CCNA_01644	0.45	-0.0
1,765,064	-		CCNA_01644	0.45	+3.4
1,765,084	+		CCNA_01644	0.48	-0.9
1,765,092	-		CCNA_01644	0.49	+1.8
1,765,094	+		CCNA_01644	0.49	-0.2
1,765,094	+				+2.8
1,765,102	-		CCNA_01644	0.50	+1.4
1,765,102	-		CCNA_01644	0.50	+1.5
1,765,102	-		CCNA_01644	0.50	+1.1
1,765,120	+		CCNA_01644	0.52	+0.5
1,765,123	-		CCNA_01644	0.52	+2.2
1,765,129	+		CCNA_01644	0.53	-1.2
1,765,138	-		CCNA_01644	0.54	+2.1
1,765,147	-		CCNA_01644	0.55	-2.8
1,765,171	+		CCNA_01644	0.57	+0.8
1,765,211	+		CCNA_01644	0.62	-0.9
1,765,219	-		CCNA_01644	0.63	+2.3
1,765,219	-		CCNA_01644	0.63	-0.1
1,765,224	-		CCNA_01644	0.63	+1.8
1,765,231	+		CCNA_01644	0.64	-0.6
1,765,238	+		CCNA_01644	0.65	+1.8
1,765,240	-		CCNA_01644	0.65	+1.7
1,765,349	+		CCNA_01644	0.77	+0.8
1,765,374	+		CCNA_01644	0.80	-0.3
1,765,382	-		CCNA_01644	0.81	+1.4
1,765,390	+		CCNA_01644	0.82	-0.3
1,765,395	+		CCNA_01644	0.82	+1.2
1,765,462	-		CCNA_01644	0.90	-0.3
1,765,514	-				+1.1
1,765,546	+				+4.8
1,765,566	+				-1.2
1,765,589	+				+1.5
1,765,597	-				-0.9
1,765,638	+				-0.2
1,765,701	+				-0.5
1,765,720	+				-1.0
1,765,720	+				+0.8
1,765,720	+				+0.2
1,765,728	-				+0.2
1,765,733	+				+0.2
1,765,761	+		CCNA_01645	0.11	+1.2
1,765,772	+		CCNA_01645	0.12	+2.1
1,765,819	+		CCNA_01645	0.18	-0.9
1,766,002	-		CCNA_01645	0.39	+2.8
1,766,015	+		CCNA_01645	0.40	+1.0
1,766,040	-		CCNA_01645	0.43	-1.4
1,766,119	+		CCNA_01645	0.52	+0.4
1,766,119	+		CCNA_01645	0.52	-0.4
1,766,119	+		CCNA_01645	0.52	+0.8
1,766,119	+		CCNA_01645	0.52	+1.0
1,766,119	+		CCNA_01645	0.52	-2.6
1,766,119	+		CCNA_01645	0.52	+0.3
1,766,119	+		CCNA_01645	0.52	+0.7
1,766,119	+		CCNA_01645	0.52	+0.3
1,766,127	-		CCNA_01645	0.53	-0.2
1,766,127	-		CCNA_01645	0.53	+0.8
1,766,127	-		CCNA_01645	0.53	+1.8
1,766,127	-		CCNA_01645	0.53	-0.3
1,766,201	+		CCNA_01645	0.62	-0.0
1,766,209	-		CCNA_01645	0.63	+1.8
1,766,209	-		CCNA_01645	0.63	+0.0
1,766,224	+		CCNA_01645	0.65	-1.2
1,766,245	+		CCNA_01645	0.67	-1.6
1,766,253	-		CCNA_01645	0.68	-0.2
1,766,288	+		CCNA_01645	0.72	+0.5
1,766,296	-		CCNA_01645	0.73	-0.8
1,766,311	-		CCNA_01645	0.75	-1.3
1,766,327	+		CCNA_01645	0.77	-1.3
1,766,375	+		CCNA_01645	0.82	-0.1
1,766,376	-		CCNA_01645	0.82	+0.7
1,766,387	+		CCNA_01645	0.84	+1.6
1,766,387	+		CCNA_01645	0.84	-1.0
1,766,387	+		CCNA_01645	0.84	+0.0
1,766,388	+		CCNA_01645	0.84	-1.1
1,766,395	-		CCNA_01645	0.85	+1.8
1,766,432	+		CCNA_01645	0.89	-1.5
1,766,440	-		CCNA_01645	0.90	-2.3
1,766,446	+				-1.1
1,766,446	+				-2.2
1,766,446	+				-0.3
1,766,446	+				+0.9
1,766,446	+				+0.2
1,766,446	+				+1.4
1,766,446	+				+0.2
1,766,446	+				+1.1
1,766,446	+				-0.5
1,766,446	+				+1.2
1,766,454	-				+0.2
1,766,454	-				-2.7
1,766,454	-				-1.6
1,766,454	-				+0.0
1,766,454	-				+2.8
1,766,454	-				+3.4
1,766,454	-				+1.8
1,766,454	-				+0.4
1,766,454	-				-1.3
1,766,454	-				-0.5
1,766,454	-				+0.1
1,766,454	-				-1.1
1,766,458	+				+1.2
1,766,464	+				+0.7
1,766,467	-				-0.2
1,766,472	-				+0.2
1,766,490	+				-0.6
1,766,490	+				+1.1
1,766,490	+				-0.3
1,766,498	-				-1.0
1,766,498	-				+1.8
1,766,504	-				+2.2
1,766,528	+				+2.7
1,766,536	-				+1.1
1,766,536	-				-0.5
1,766,536	-				-0.6
1,766,570	-				-1.4
1,766,617	-		CCNA_01646	0.14	+0.4
1,766,619	+		CCNA_01646	0.14	+1.2
1,766,619	+		CCNA_01646	0.14	-0.2
1,766,626	+		CCNA_01646	0.15	-0.3
1,766,627	-		CCNA_01646	0.16	+1.7
1,766,652	+		CCNA_01646	0.19	+2.8
1,766,654	-		CCNA_01646	0.20	+0.4
1,766,675	+		CCNA_01646	0.23	-0.8
1,766,685	+		CCNA_01646	0.24	+2.0
1,766,685	+		CCNA_01646	0.24	+1.2
1,766,688	-		CCNA_01646	0.25	+0.7
1,766,704	-		CCNA_01646	0.27	+0.8
1,766,710	-		CCNA_01646	0.28	-1.5
1,766,719	-		CCNA_01646	0.30	+0.7
1,766,732	-		CCNA_01646	0.32	-0.3
1,766,744	-		CCNA_01646	0.33	-0.2
1,766,769	+		CCNA_01646	0.37	-1.0
1,766,769	+		CCNA_01646	0.37	+0.5
1,766,777	-		CCNA_01646	0.38	-1.1
1,766,780	+		CCNA_01646	0.39	+0.8
1,766,788	-		CCNA_01646	0.40	+1.8
1,766,795	-		CCNA_01646	0.41	-0.6
1,766,796	-		CCNA_01646	0.41	-1.7
1,766,850	-		CCNA_01646	0.49	+1.4
1,766,853	+		CCNA_01646	0.50	+0.0
1,766,896	-		CCNA_01646	0.56	-0.6
1,766,903	+		CCNA_01646	0.57	-0.6
1,766,905	+		CCNA_01646	0.58	-1.9
1,766,921	+		CCNA_01646	0.60	-0.9
1,766,936	+		CCNA_01646	0.62	+2.8
1,767,036	+		CCNA_01646	0.78	+0.2
1,767,036	+		CCNA_01646	0.78	+0.0
1,767,036	+		CCNA_01646	0.78	+0.8
1,767,044	-		CCNA_01646	0.79	-0.2
1,767,051	+		CCNA_01646	0.80	-0.9
1,767,072	-		CCNA_01646	0.83	+2.8
1,767,110	+		CCNA_01646	0.89	-1.4
1,767,118	-				+0.5
1,767,120	-				+1.2
1,767,194	+				-0.8
1,767,282	+				+0.4
1,767,290	-				-1.1
1,767,290	-				-0.3
1,767,290	-				-0.9
1,767,377	-		CCNA_01647	0.17	-1.5
1,767,410	+		CCNA_01647	0.20	+0.5
1,767,418	-		CCNA_01647	0.21	-1.5
1,767,418	-		CCNA_01647	0.21	-2.7
1,767,418	-		CCNA_01647	0.21	-1.1
1,767,436	+		CCNA_01647	0.22	-0.8
1,767,519	+		CCNA_01647	0.29	+0.2
1,767,521	-		CCNA_01647	0.30	-0.3
1,767,521	-		CCNA_01647	0.30	+0.0