Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01601

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,721,170	-				+0.0
1,721,181	+				-2.2
1,721,204	+		CCNA_01600	0.10	-0.7
1,721,211	+		CCNA_01600	0.11	-0.6
1,721,211	+		CCNA_01600	0.11	-0.5
1,721,211	+		CCNA_01600	0.11	-1.0
1,721,211	+		CCNA_01600	0.11	-0.2
1,721,219	-		CCNA_01600	0.12	+0.8
1,721,219	-		CCNA_01600	0.12	-0.6
1,721,219	-		CCNA_01600	0.12	+0.8
1,721,240	-		CCNA_01600	0.14	+1.3
1,721,240	-		CCNA_01600	0.14	+1.0
1,721,240	-		CCNA_01600	0.14	+0.0
1,721,255	-		CCNA_01600	0.16	+0.8
1,721,282	-		CCNA_01600	0.19	+0.1
1,721,325	+		CCNA_01600	0.24	+0.7
1,721,325	+		CCNA_01600	0.24	+0.1
1,721,333	-		CCNA_01600	0.25	-1.2
1,721,333	-		CCNA_01600	0.25	+0.2
1,721,333	-		CCNA_01600	0.25	+2.6
1,721,333	-		CCNA_01600	0.25	-1.0
1,721,333	-		CCNA_01600	0.25	-0.6
1,721,399	-		CCNA_01600	0.32	-0.2
1,721,404	+		CCNA_01600	0.32	-0.7
1,721,470	-		CCNA_01600	0.40	-1.7
1,721,471	-		CCNA_01600	0.40	-0.5
1,721,544	-		CCNA_01600	0.48	+1.3
1,721,544	-		CCNA_01600	0.48	-0.1
1,721,563	+		CCNA_01600	0.50	+0.5
1,721,563	+		CCNA_01600	0.50	-0.2
1,721,563	+		CCNA_01600	0.50	+1.3
1,721,566	-		CCNA_01600	0.50	-1.2
1,721,568	+		CCNA_01600	0.50	+0.5
1,721,568	+		CCNA_01600	0.50	-0.2
1,721,568	+		CCNA_01600	0.50	+0.2
1,721,571	-		CCNA_01600	0.51	-0.3
1,721,618	-		CCNA_01600	0.56	-0.2
1,721,720	+		CCNA_01600	0.67	+0.5
1,721,728	-		CCNA_01600	0.68	-0.4
1,721,775	-		CCNA_01600	0.73	-0.7
1,721,783	+		CCNA_01600	0.74	+0.3
1,721,796	-		CCNA_01600	0.76	+0.7
1,721,808	-		CCNA_01600	0.77	-1.4
1,721,863	+		CCNA_01600	0.83	+1.8
1,721,878	+		CCNA_01600	0.85	+2.3
1,721,886	-		CCNA_01600	0.85	-0.7
1,721,886	-		CCNA_01600	0.85	+0.0
1,721,897	+		CCNA_01600	0.87	+0.8
1,721,905	-		CCNA_01600	0.88	-1.3
1,721,923	+		CCNA_01600	0.90	+0.5
1,721,960	-				-1.2
1,722,075	+				-0.4
1,722,083	-				-2.4
1,722,101	+				+0.3
1,722,130	-				+1.8
1,722,190	-		CCNA_01601	0.15	+0.0
1,722,190	-		CCNA_01601	0.15	-0.3
1,722,197	+		CCNA_01601	0.18	-0.6
1,722,256	+		CCNA_01601	0.43	-0.3
1,722,256	+		CCNA_01601	0.43	-1.1
1,722,278	-		CCNA_01601	0.52	+0.1
1,722,280	+		CCNA_01601	0.53	-1.5
1,722,303	+		CCNA_01601	0.63	-1.6
1,722,303	+		CCNA_01601	0.63	-2.2
1,722,303	+		CCNA_01601	0.63	+0.0
1,722,303	+		CCNA_01601	0.63	-1.3
1,722,303	+		CCNA_01601	0.63	+0.0
1,722,303	+		CCNA_01601	0.63	-0.5
1,722,303	+		CCNA_01601	0.63	-0.2
1,722,311	-		CCNA_01601	0.66	+1.3
1,722,311	-		CCNA_01601	0.66	-0.5
1,722,311	-		CCNA_01601	0.66	-0.2
1,722,313	+		CCNA_01601	0.67	-1.9
1,722,317	+		CCNA_01601	0.69	-0.3
1,722,320	-		CCNA_01601	0.70	-0.6
1,722,323	-		CCNA_01601	0.71	+0.0
1,722,342	-		CCNA_01601	0.79	-0.3
1,722,342	-		CCNA_01601	0.79	-0.3
1,722,357	-		CCNA_01601	0.86	+0.0
1,722,485	-				+1.6
1,722,500	-				+1.8
1,722,514	+				+0.2
1,722,514	+				+1.3
1,722,528	+				+0.3
1,722,529	+				+0.5
1,722,536	-				+0.4
1,722,539	-				-1.3
1,722,540	+				+1.3
1,722,548	-				-0.3
1,722,564	+				-0.9
1,722,564	+				+0.8
1,722,564	+				+0.7
1,722,567	-				-0.6
1,722,567	-				-0.9
1,722,572	-				-0.2
1,722,630	+		CCNA_01602	0.18	+0.1
1,722,667	+		CCNA_01602	0.23	-0.6
1,722,673	+		CCNA_01602	0.24	-0.5
1,722,754	-		CCNA_01602	0.37	+1.8
1,722,809	-		CCNA_01602	0.46	-1.3
1,722,809	-		CCNA_01602	0.46	+0.4
1,722,851	+		CCNA_01602	0.52	+0.9
1,722,878	-		CCNA_01602	0.56	-0.5
1,722,883	+		CCNA_01602	0.57	+0.4
1,722,891	-		CCNA_01602	0.59	+0.2
1,722,892	+		CCNA_01602	0.59	-1.3
1,722,973	+		CCNA_01602	0.71	-0.2
1,722,990	-		CCNA_01602	0.74	+1.8
1,722,990	-		CCNA_01602	0.74	+0.0
1,723,114	+				-0.2
1,723,115	-				-0.4
1,723,129	+				+1.3
1,723,160	+				+0.8
1,723,181	+				+2.4
1,723,192	+				-1.0
1,723,200	-				+2.6
1,723,202	+				+0.8
1,723,216	+				+0.5
1,723,231	+				+0.3
1,723,248	+				-0.6
1,723,297	+				-0.2
1,723,337	+				+1.2