Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01599

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,719,958	-		CCNA_01598	0.40	+2.8
1,719,958	-		CCNA_01598	0.40	+2.8
1,720,002	-		CCNA_01598	0.43	-1.6
1,720,002	-		CCNA_01598	0.43	+0.5
1,720,008	-		CCNA_01598	0.44	-1.6
1,720,047	-		CCNA_01598	0.46	+0.3
1,720,101	-		CCNA_01598	0.50	+1.3
1,720,116	+		CCNA_01598	0.51	-0.4
1,720,187	+		CCNA_01598	0.55	-0.6
1,720,244	-		CCNA_01598	0.59	-1.6
1,720,248	+		CCNA_01598	0.60	-0.7
1,720,248	+		CCNA_01598	0.60	+1.0
1,720,248	+		CCNA_01598	0.60	+0.8
1,720,248	+		CCNA_01598	0.60	+1.0
1,720,256	-		CCNA_01598	0.60	-0.7
1,720,256	-		CCNA_01598	0.60	+1.3
1,720,258	+		CCNA_01598	0.60	+2.4
1,720,258	+		CCNA_01598	0.60	+2.9
1,720,275	-		CCNA_01598	0.61	+0.8
1,720,322	+		CCNA_01598	0.64	+0.8
1,720,330	+		CCNA_01598	0.65	-2.1
1,720,330	-		CCNA_01598	0.65	+0.7
1,720,341	+		CCNA_01598	0.66	+0.3
1,720,392	+		CCNA_01598	0.69	+0.7
1,720,404	-		CCNA_01598	0.70	-0.2
1,720,412	-		CCNA_01598	0.70	+0.3
1,720,421	-		CCNA_01598	0.71	-0.3
1,720,424	-				+1.8
1,720,469	-		CCNA_01598	0.74	+2.7
1,720,540	+		CCNA_01598	0.79	-0.5
1,720,562	+		CCNA_01598	0.80	+1.3
1,720,592	+		CCNA_01598	0.82	-2.2
1,720,607	+		CCNA_01598	0.83	-0.9
1,720,607	+		CCNA_01598	0.83	-1.5
1,720,615	-		CCNA_01598	0.84	-0.7
1,720,615	-		CCNA_01598	0.84	-1.1
1,720,626	+		CCNA_01598	0.85	-0.9
1,720,626	+		CCNA_01598	0.85	+1.7
1,720,634	-		CCNA_01598	0.85	-0.7
1,720,634	-		CCNA_01598	0.85	+1.3
1,720,639	-		CCNA_01598	0.85	-1.4
1,720,650	-		CCNA_01598	0.86	+1.3
1,720,660	-		CCNA_01598	0.87	+2.8
1,720,693	+		CCNA_01598	0.89	-1.3
1,720,693	+		CCNA_01598	0.89	-0.2
1,720,693	+		CCNA_01598	0.89	+0.3
1,720,693	+		CCNA_01598	0.89	+1.3
1,720,693	+		CCNA_01598	0.89	+1.3
1,720,701	-		CCNA_01598	0.89	-0.5
1,720,701	-		CCNA_01598	0.89	-0.3
1,720,701	-		CCNA_01598	0.89	+1.0
1,720,709	+				-0.9
1,720,751	-				+1.3
1,720,762	-				-0.9
1,720,862	-				+2.8
1,720,862	-				-2.2
1,720,862	-				-0.2
1,720,862	-				+0.9
1,720,891	+				+1.8
1,720,899	-				+1.3
1,720,904	-				+0.2
1,720,932	-				-1.2
1,720,932	-				-1.3
1,720,932	-				-0.2
1,720,932	-				-1.2
1,720,932	-				-0.5
1,720,933	-				-0.6
1,720,993	+				+0.8
1,721,008	-		CCNA_01599	0.46	+1.3
1,721,011	+		CCNA_01599	0.47	-0.9
1,721,019	-		CCNA_01599	0.52	+1.5
1,721,026	+		CCNA_01599	0.56	-1.0
1,721,026	+		CCNA_01599	0.56	-2.0
1,721,054	+		CCNA_01599	0.72	+0.5
1,721,054	+		CCNA_01599	0.72	-0.7
1,721,060	+		CCNA_01599	0.75	-1.4
1,721,060	+		CCNA_01599	0.75	+1.8
1,721,062	-		CCNA_01599	0.76	-0.5
1,721,068	-		CCNA_01599	0.80	-1.5
1,721,068	-		CCNA_01599	0.80	+0.7
1,721,075	+		CCNA_01599	0.84	-0.5
1,721,077	-		CCNA_01599	0.85	+0.3
1,721,080	+		CCNA_01599	0.86	+1.8
1,721,105	+				+0.7
1,721,121	-				-0.6
1,721,121	-				+1.3
1,721,140	+				+1.3
1,721,170	-				+0.0
1,721,181	+				-2.2
1,721,204	+		CCNA_01600	0.10	-0.7
1,721,211	+		CCNA_01600	0.11	-0.6
1,721,211	+		CCNA_01600	0.11	-0.5
1,721,211	+		CCNA_01600	0.11	-1.0
1,721,211	+		CCNA_01600	0.11	-0.2
1,721,219	-		CCNA_01600	0.12	+0.8
1,721,219	-		CCNA_01600	0.12	-0.6
1,721,219	-		CCNA_01600	0.12	+0.8
1,721,240	-		CCNA_01600	0.14	+1.3
1,721,240	-		CCNA_01600	0.14	+1.0
1,721,240	-		CCNA_01600	0.14	+0.0
1,721,255	-		CCNA_01600	0.16	+0.8
1,721,282	-		CCNA_01600	0.19	+0.1
1,721,325	+		CCNA_01600	0.24	+0.7
1,721,325	+		CCNA_01600	0.24	+0.1
1,721,333	-		CCNA_01600	0.25	-1.2
1,721,333	-		CCNA_01600	0.25	+0.2
1,721,333	-		CCNA_01600	0.25	+2.6
1,721,333	-		CCNA_01600	0.25	-1.0
1,721,333	-		CCNA_01600	0.25	-0.6
1,721,399	-		CCNA_01600	0.32	-0.2
1,721,404	+		CCNA_01600	0.32	-0.7
1,721,470	-		CCNA_01600	0.40	-1.7
1,721,471	-		CCNA_01600	0.40	-0.5
1,721,544	-		CCNA_01600	0.48	+1.3
1,721,544	-		CCNA_01600	0.48	-0.1
1,721,563	+		CCNA_01600	0.50	+0.5
1,721,563	+		CCNA_01600	0.50	-0.2
1,721,563	+		CCNA_01600	0.50	+1.3
1,721,566	-		CCNA_01600	0.50	-1.2
1,721,568	+		CCNA_01600	0.50	+0.5
1,721,568	+		CCNA_01600	0.50	-0.2
1,721,568	+		CCNA_01600	0.50	+0.2
1,721,571	-		CCNA_01600	0.51	-0.3
1,721,618	-		CCNA_01600	0.56	-0.2
1,721,720	+		CCNA_01600	0.67	+0.5
1,721,728	-		CCNA_01600	0.68	-0.4
1,721,775	-		CCNA_01600	0.73	-0.7
1,721,783	+		CCNA_01600	0.74	+0.3
1,721,796	-		CCNA_01600	0.76	+0.7
1,721,808	-		CCNA_01600	0.77	-1.4
1,721,863	+		CCNA_01600	0.83	+1.8
1,721,878	+		CCNA_01600	0.85	+2.3
1,721,886	-		CCNA_01600	0.85	-0.7
1,721,886	-		CCNA_01600	0.85	+0.0
1,721,897	+		CCNA_01600	0.87	+0.8
1,721,905	-		CCNA_01600	0.88	-1.3
1,721,923	+		CCNA_01600	0.90	+0.5
1,721,960	-				-1.2
1,722,075	+				-0.4
1,722,083	-				-2.4
1,722,101	+				+0.3