Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01594

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,714,067	-		CCNA_01593	0.58	+0.5
1,714,090	+				+2.8
1,714,090	+		CCNA_01593	0.59	-0.5
1,714,090	+		CCNA_01593	0.59	+1.8
1,714,090	+		CCNA_01593	0.59	+0.1
1,714,098	-		CCNA_01593	0.59	+1.3
1,714,142	+		CCNA_01593	0.62	+0.5
1,714,171	-		CCNA_01593	0.64	+2.2
1,714,242	-		CCNA_01593	0.67	+1.7
1,714,365	+		CCNA_01593	0.74	-0.0
1,714,365	+		CCNA_01593	0.74	+0.8
1,714,373	-		CCNA_01593	0.75	+2.7
1,714,432	+		CCNA_01593	0.78	+0.5
1,714,526	+		CCNA_01593	0.83	+0.0
1,714,636	-		CCNA_01593	0.89	+2.3
1,714,763	-				+0.8
1,714,804	-				+2.8
1,714,820	+				+0.3
1,714,828	-				+3.4
1,714,839	+				+1.5
1,714,844	+				+2.3
1,714,863	-				+0.0
1,714,887	+				+0.0
1,714,895	-				+0.7
1,714,925	-				-0.6
1,714,931	-				-0.2
1,714,940	-				+2.3
1,714,949	+				-0.5
1,714,951	+				-0.5
1,714,951	+				-0.5
1,714,957	-				-0.6
1,714,957	-				+0.1
1,714,957	-				-0.9
1,714,957	-				+0.3
1,714,959	-				+1.0
1,715,091	-				+0.9
1,715,099	-				+0.7
1,715,117	+				+0.8
1,715,125	-		CCNA_01594	0.10	+1.5
1,715,138	+		CCNA_01594	0.12	-1.5
1,715,207	-		CCNA_01594	0.20	+2.0
1,715,212	-		CCNA_01594	0.20	+0.5
1,715,239	+		CCNA_01594	0.24	+0.5
1,715,247	-		CCNA_01594	0.24	+0.0
1,715,285	+		CCNA_01594	0.29	+0.8
1,715,291	-		CCNA_01594	0.30	+1.3
1,715,334	+		CCNA_01594	0.34	+0.6
1,715,342	-		CCNA_01594	0.35	-0.2
1,715,390	-		CCNA_01594	0.41	+1.6
1,715,480	-		CCNA_01594	0.51	+1.6
1,715,482	+		CCNA_01594	0.52	-1.4
1,715,490	-		CCNA_01594	0.52	+0.9
1,715,501	+		CCNA_01594	0.54	+1.8
1,715,504	+		CCNA_01594	0.54	+0.0
1,715,504	+		CCNA_01594	0.54	+0.8
1,715,563	+		CCNA_01594	0.61	+1.8
1,715,640	-		CCNA_01594	0.70	+0.8
1,715,657	+		CCNA_01594	0.72	+0.8
1,715,670	-		CCNA_01594	0.73	+0.3
1,715,814	-		CCNA_01594	0.90	-0.6
1,715,829	-				+0.8
1,715,829	-				-0.4
1,715,842	+				+1.7
1,715,949	+				+0.0
1,715,958	-				+2.8
1,715,987	-				-0.2
1,715,987	-				+0.5
1,715,987	-				-2.3
1,716,089	+		CCNA_01595	0.30	-0.3
1,716,134	+		CCNA_01595	0.39	-0.5
1,716,136	+		CCNA_01595	0.39	+1.3
1,716,212	-		CCNA_01595	0.55	+0.8
1,716,232	+		CCNA_01595	0.59	+0.5
1,716,239	+		CCNA_01595	0.60	-0.5
1,716,240	-		CCNA_01595	0.60	+0.8
1,716,271	-		CCNA_01595	0.67	+0.5
1,716,304	+		CCNA_01595	0.73	-0.7
1,716,304	+		CCNA_01595	0.73	+1.8
1,716,304	+		CCNA_01595	0.73	+2.8
1,716,312	-		CCNA_01595	0.75	+0.7
1,716,349	-		CCNA_01595	0.82	-0.6
1,716,358	+		CCNA_01595	0.84	-1.4
1,716,358	+		CCNA_01595	0.84	-1.1
1,716,358	+		CCNA_01595	0.84	+1.3
1,716,366	-		CCNA_01595	0.86	-2.3
1,716,366	-		CCNA_01595	0.86	-0.5
1,716,366	-		CCNA_01595	0.86	-1.5
1,716,375	-		CCNA_01595	0.88	+2.8
1,716,406	-				+0.2
1,716,406	-				+1.3
1,716,406	-				-0.2
1,716,406	-				+0.9
1,716,406	-				+1.6
1,716,406	-				+0.0
1,716,406	-				+1.4
1,716,408	+				+2.1
1,716,408	+				+2.0
1,716,416	-				+0.0
1,716,435	+				-0.2
1,716,438	-				+1.4
1,716,448	-				-0.8
1,716,471	+				-1.1
1,716,476	+				+0.8
1,716,484	-				+0.6
1,716,484	-				-0.4
1,716,529	-				-1.0
1,716,559	-				+1.2
1,716,568	-				+1.8
1,716,601	+				+1.3
1,716,612	+				-1.7
1,716,677	-				+1.1
1,716,691	-				+2.1
1,716,708	-				+1.1
1,716,746	+		CCNA_01596	0.11	+0.0
1,716,746	-		CCNA_01596	0.11	+0.0
1,716,754	-				+2.8
1,716,778	+		CCNA_01596	0.12	-0.6
1,716,785	-		CCNA_01596	0.13	+1.2