Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01562

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,679,202	+		CCNA_01560	0.84	-0.0
1,679,205	-		CCNA_01560	0.84	-0.6
1,679,288	+		CCNA_01560	0.87	+0.2
1,679,310	+		CCNA_01560	0.88	-0.9
1,679,314	-		CCNA_01560	0.88	+0.5
1,679,317	+		CCNA_01560	0.88	+0.0
1,679,370	+		CCNA_01560	0.90	+1.1
1,679,370	+		CCNA_01560	0.90	+0.2
1,679,378	-				+0.2
1,679,378	-				+0.5
1,679,378	-				+0.2
1,679,397	+				-0.0
1,679,409	+				+0.8
1,679,426	+				+0.0
1,679,426	+				-2.9
1,679,434	-				-1.4
1,679,460	+				+2.1
1,679,469	-				+0.0
1,679,494	+				+0.3
1,679,495	-				-0.3
1,679,513	-				+1.8
1,679,520	+				-1.6
1,679,858	-		CCNA_01561	0.16	-0.6
1,679,909	-		CCNA_01561	0.29	+1.8
1,679,955	-		CCNA_01561	0.41	-1.8
1,679,955	-		CCNA_01561	0.41	-0.2
1,679,977	-		CCNA_01561	0.47	+0.2
1,679,977	-		CCNA_01561	0.47	+0.8
1,680,025	+		CCNA_01561	0.59	-0.0
1,680,059	-		CCNA_01561	0.68	+0.8
1,680,075	+		CCNA_01561	0.72	-0.4
1,680,075	+		CCNA_01561	0.72	-1.8
1,680,075	+		CCNA_01561	0.72	+0.0
1,680,082	+		CCNA_01561	0.74	+0.8
1,680,178	+				+0.2
1,680,492	+		CCNA_01562	0.47	+0.0
1,680,533	+		CCNA_01562	0.53	+0.2
1,680,557	+		CCNA_01562	0.57	-2.8
1,680,565	-		CCNA_01562	0.58	+0.8
1,680,588	+		CCNA_01562	0.61	+0.5
1,680,588	+		CCNA_01562	0.61	-1.5
1,680,645	+		CCNA_01562	0.70	-1.6
1,680,674	+		CCNA_01562	0.74	-2.2
1,680,697	+		CCNA_01562	0.77	-1.7
1,680,705	-		CCNA_01562	0.79	-0.5
1,680,746	+		CCNA_01562	0.85	-0.6
1,680,748	-		CCNA_01562	0.85	+1.8
1,680,812	+				-0.5
1,680,812	+				+0.5
1,680,812	+				+2.8
1,680,812	+				-2.3
1,680,820	-				-0.2
1,680,911	-				+0.8
1,680,975	+		CCNA_01563	0.11	+0.9
1,680,975	+		CCNA_01563	0.11	+0.6
1,680,981	+		CCNA_01563	0.11	+0.5
1,681,000	+		CCNA_01563	0.13	+0.7
1,681,009	-		CCNA_01563	0.14	+0.2
1,681,021	+		CCNA_01563	0.15	-0.3
1,681,029	+		CCNA_01563	0.16	-0.9
1,681,029	+		CCNA_01563	0.16	+0.4
1,681,066	-		CCNA_01563	0.19	-1.1
1,681,075	+		CCNA_01563	0.20	-1.1
1,681,099	+		CCNA_01563	0.22	-0.8
1,681,125	-		CCNA_01563	0.24	+0.8
1,681,125	-		CCNA_01563	0.24	+0.2
1,681,197	+		CCNA_01563	0.31	-0.5
1,681,216	+		CCNA_01563	0.33	-0.3
1,681,224	-		CCNA_01563	0.33	+1.2
1,681,224	-		CCNA_01563	0.33	-0.6
1,681,224	-		CCNA_01563	0.33	-0.3
1,681,332	-		CCNA_01563	0.43	+0.2
1,681,339	+		CCNA_01563	0.44	-0.5
1,681,342	-		CCNA_01563	0.44	-0.6
1,681,344	+		CCNA_01563	0.44	+0.2
1,681,376	+		CCNA_01563	0.47	-1.2
1,681,385	-		CCNA_01563	0.48	+0.0
1,681,388	+		CCNA_01563	0.48	+0.8
1,681,400	+		CCNA_01563	0.49	-1.8
1,681,408	+		CCNA_01563	0.50	-0.6
1,681,408	-		CCNA_01563	0.50	-0.2
1,681,413	-		CCNA_01563	0.50	-0.3
1,681,422	+		CCNA_01563	0.51	-0.9
1,681,436	+		CCNA_01563	0.52	-0.5
1,681,469	+		CCNA_01563	0.55	+1.8
1,681,476	+		CCNA_01563	0.56	-1.6
1,681,500	-		CCNA_01563	0.58	+2.8
1,681,562	+		CCNA_01563	0.64	-1.6
1,681,575	+		CCNA_01563	0.65	+1.5
1,681,649	-		CCNA_01563	0.72	+0.5
1,681,649	-		CCNA_01563	0.72	+1.2
1,681,649	-		CCNA_01563	0.72	+0.5
1,681,655	+		CCNA_01563	0.72	+1.0
1,681,660	+		CCNA_01563	0.73	-0.6
1,681,663	-		CCNA_01563	0.73	-1.1
1,681,663	-		CCNA_01563	0.73	-1.6
1,681,663	-		CCNA_01563	0.73	-0.8
1,681,665	+		CCNA_01563	0.73	-0.6
1,681,668	-		CCNA_01563	0.73	+1.2
1,681,671	+		CCNA_01563	0.74	-0.6
1,681,687	+		CCNA_01563	0.75	+0.2
1,681,687	+		CCNA_01563	0.75	+0.9
1,681,700	+		CCNA_01563	0.76	+1.9
1,681,725	+		CCNA_01563	0.79	+1.9
1,681,725	+		CCNA_01563	0.79	+0.7
1,681,725	+		CCNA_01563	0.79	+0.0
1,681,733	-		CCNA_01563	0.79	+2.2
1,681,811	+		CCNA_01563	0.86	+1.1
1,681,812	-		CCNA_01563	0.86	+0.5
1,681,843	+		CCNA_01563	0.89	+1.6