Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01484

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,590,126	-		CCNA_01481	0.73	+2.8
1,590,160	-		CCNA_01481	0.75	-0.5
1,590,172	-		CCNA_01481	0.75	+1.2
1,590,226	+		CCNA_01481	0.78	+1.1
1,590,226	+		CCNA_01481	0.78	+0.9
1,590,239	-		CCNA_01481	0.79	-0.5
1,590,314	+		CCNA_01481	0.83	+0.7
1,590,314	+		CCNA_01481	0.83	-0.3
1,590,314	+		CCNA_01481	0.83	-1.1
1,590,324	+		CCNA_01481	0.84	-0.8
1,590,332	+		CCNA_01481	0.84	-0.9
1,590,332	+		CCNA_01481	0.84	+1.4
1,590,332	+		CCNA_01481	0.84	-1.2
1,590,332	+		CCNA_01481	0.84	-0.2
1,590,332	+		CCNA_01481	0.84	-0.0
1,590,332	+		CCNA_01481	0.84	-0.0
1,590,332	+		CCNA_01481	0.84	+0.4
1,590,332	+		CCNA_01481	0.84	+0.5
1,590,332	-		CCNA_01481	0.84	-1.1
1,590,340	-		CCNA_01481	0.85	-0.9
1,590,340	-		CCNA_01481	0.85	+0.8
1,590,340	-		CCNA_01481	0.85	+1.0
1,590,340	-		CCNA_01481	0.85	+1.2
1,590,340	-		CCNA_01481	0.85	-0.8
1,590,340	-		CCNA_01481	0.85	+0.8
1,590,414	-		CCNA_01481	0.89	-0.7
1,590,437	+				+1.0
1,590,466	+				-0.1
1,590,466	+				-1.1
1,590,470	+				+2.0
1,590,474	-				+1.8
1,590,530	+				-0.5
1,590,541	-				+1.8
1,590,633	+				+0.2
1,590,633	+				-1.9
1,590,641	-				+1.2
1,590,656	+				-0.7
1,590,671	+				+0.8
1,590,671	-				+0.5
1,590,678	+				-0.9
1,590,689	+				-0.9
1,590,737	-				-0.7
1,590,757	-				-2.3
1,590,758	-				-0.3
1,590,821	+				-0.9
1,590,938	-		CCNA_01483	0.32	+0.5
1,591,021	-		CCNA_01483	0.69	-1.7
1,591,023	+		CCNA_01483	0.70	+1.3
1,591,023	+		CCNA_01483	0.70	-0.4
1,591,023	+		CCNA_01483	0.70	+0.6
1,591,031	-		CCNA_01483	0.74	+0.5
1,591,036	-		CCNA_01483	0.76	+0.2
1,591,089	+				+1.8
1,591,099	+				-0.9
1,591,099	+				-1.0
1,591,104	+				-0.9
1,591,104	+				+0.5
1,591,104	+				-0.7
1,591,107	-				+0.2
1,591,107	-				-0.0
1,591,109	+				-1.9
1,591,112	-				+1.8
1,591,112	-				-0.2
1,591,118	+				-1.0
1,591,191	+		CCNA_01484	0.19	-0.2
1,591,299	-		CCNA_01484	0.45	-0.0
1,591,311	-		CCNA_01484	0.48	-0.2
1,591,311	-		CCNA_01484	0.48	-2.6
1,591,311	-		CCNA_01484	0.48	+0.8
1,591,357	+		CCNA_01484	0.59	-0.0
1,591,357	+		CCNA_01484	0.59	-2.3
1,591,364	+		CCNA_01484	0.60	-0.9
1,591,369	+		CCNA_01484	0.61	-1.3
1,591,386	-		CCNA_01484	0.65	+0.2
1,591,442	+		CCNA_01484	0.79	-0.7
1,591,443	-		CCNA_01484	0.79	+0.2
1,591,542	+				+0.6
1,591,553	+				+1.0
1,591,581	-				+0.7
1,591,586	-				-0.8
1,591,588	+				+0.2
1,591,588	+				-0.2
1,591,596	-				-1.0
1,591,596	-				-1.7
1,591,596	-				+1.8
1,591,627	-				+0.2
1,591,654	-		CCNA_01485	0.10	-0.7
1,591,660	-		CCNA_01485	0.11	-0.7
1,591,697	+		CCNA_01485	0.14	-0.8
1,591,697	+		CCNA_01485	0.14	+0.1
1,591,697	+		CCNA_01485	0.14	-0.7
1,591,705	-		CCNA_01485	0.15	+1.2
1,591,705	-		CCNA_01485	0.15	-0.2
1,591,723	+		CCNA_01485	0.16	+0.5
1,591,723	+		CCNA_01485	0.16	-1.7
1,591,731	-		CCNA_01485	0.17	-1.0
1,591,736	-		CCNA_01485	0.18	+0.5
1,591,821	-		CCNA_01485	0.25	-0.9
1,591,835	-		CCNA_01485	0.26	+0.8
1,591,835	-		CCNA_01485	0.26	-0.2
1,591,835	-		CCNA_01485	0.26	-2.6
1,591,847	-		CCNA_01485	0.27	-2.2
1,591,866	+		CCNA_01485	0.29	-0.0
1,591,868	+		CCNA_01485	0.29	-1.6
1,591,868	+		CCNA_01485	0.29	-0.4
1,591,915	-		CCNA_01485	0.33	-1.4
1,591,940	+		CCNA_01485	0.36	-1.1
1,591,945	+		CCNA_01485	0.36	+2.8
1,591,953	-		CCNA_01485	0.37	+0.5
1,591,953	-		CCNA_01485	0.37	-0.4
1,591,960	+		CCNA_01485	0.37	+1.8
1,591,970	+		CCNA_01485	0.38	-0.0
1,591,970	+		CCNA_01485	0.38	-0.0
1,591,970	+		CCNA_01485	0.38	+0.5
1,591,985	+		CCNA_01485	0.39	-0.7
1,591,993	-		CCNA_01485	0.40	+0.8
1,592,007	+		CCNA_01485	0.41	+0.2
1,592,015	-		CCNA_01485	0.42	-0.5
1,592,022	-		CCNA_01485	0.43	-0.2
1,592,061	-		CCNA_01485	0.46	+0.5
1,592,063	+		CCNA_01485	0.46	-1.1
1,592,063	-		CCNA_01485	0.46	-2.1
1,592,071	-		CCNA_01485	0.47	-2.3
1,592,078	+		CCNA_01485	0.48	-0.0
1,592,078	+		CCNA_01485	0.48	-0.0
1,592,086	-		CCNA_01485	0.48	+0.5
1,592,146	+		CCNA_01485	0.54	-2.5
1,592,176	+		CCNA_01485	0.56	+0.5
1,592,184	-		CCNA_01485	0.57	+0.2
1,592,231	+		CCNA_01485	0.61	-0.4
1,592,234	-		CCNA_01485	0.61	+1.8
1,592,236	+		CCNA_01485	0.62	+1.8
1,592,254	+		CCNA_01485	0.63	-0.0
1,592,276	-		CCNA_01485	0.65	+0.2
1,592,282	-		CCNA_01485	0.66	+0.2
1,592,284	-		CCNA_01485	0.66	-0.2
1,592,289	+		CCNA_01485	0.66	+0.9
1,592,289	+		CCNA_01485	0.66	+1.1
1,592,313	+		CCNA_01485	0.68	+1.2
1,592,313	+		CCNA_01485	0.68	+0.8
1,592,321	-		CCNA_01485	0.69	+0.2
1,592,321	-		CCNA_01485	0.69	+1.2
1,592,321	-		CCNA_01485	0.69	-0.8
1,592,321	-		CCNA_01485	0.69	+1.8
1,592,423	-		CCNA_01485	0.78	-0.8
1,592,439	+		CCNA_01485	0.79	-0.2
1,592,439	+		CCNA_01485	0.79	+2.2
1,592,447	-		CCNA_01485	0.80	+0.8
1,592,447	-		CCNA_01485	0.80	+0.2
1,592,490	+		CCNA_01485	0.84	-0.9
1,592,490	+		CCNA_01485	0.84	-0.2
1,592,490	+		CCNA_01485	0.84	-0.8
1,592,490	+		CCNA_01485	0.84	-1.5
1,592,498	-		CCNA_01485	0.85	+0.0
1,592,501	+		CCNA_01485	0.85	-0.0
1,592,509	-		CCNA_01485	0.86	+2.8
1,592,509	-		CCNA_01485	0.86	-0.0
1,592,516	+		CCNA_01485	0.86	+1.2
1,592,518	+		CCNA_01485	0.86	+0.5