Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01410

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,527,567	+				-1.3
1,527,595	+				+2.5
1,527,605	+				+0.1
1,527,615	-				-0.7
1,527,618	+				+0.1
1,527,626	-				-0.6
1,527,643	+				+0.4
1,527,651	-				+0.4
1,527,651	-				+0.1
1,527,651	-				+0.4
1,527,656	-				-2.5
1,527,677	+				+0.7
1,527,685	-				-1.0
1,527,702	+				+0.5
1,527,758	+				-0.3
1,527,766	-				-0.9
1,527,768	+				-0.9
1,527,768	+				+0.7
1,527,776	-		CCNA_01410	0.10	+0.1
1,527,824	+		CCNA_01410	0.14	-0.1
1,527,824	+		CCNA_01410	0.14	+0.7
1,527,824	+		CCNA_01410	0.14	-0.7
1,527,853	-		CCNA_01410	0.16	+0.7
1,527,918	+		CCNA_01410	0.20	-1.4
1,528,043	-				+2.7
1,528,063	+		CCNA_01410	0.30	-0.9
1,528,079	-		CCNA_01410	0.31	-0.4
1,528,089	+		CCNA_01410	0.31	+2.7
1,528,102	-		CCNA_01410	0.32	+0.3
1,528,102	-		CCNA_01410	0.32	-2.3
1,528,102	-		CCNA_01410	0.32	+0.7
1,528,114	-		CCNA_01410	0.33	+0.7
1,528,131	-		CCNA_01410	0.34	-0.7
1,528,145	+		CCNA_01410	0.35	-1.0
1,528,150	+		CCNA_01410	0.35	+0.4
1,528,150	+		CCNA_01410	0.35	+0.3
1,528,153	-		CCNA_01410	0.36	-0.3
1,528,155	+		CCNA_01410	0.36	-1.5
1,528,156	+		CCNA_01410	0.36	-1.4
1,528,158	-		CCNA_01410	0.36	-0.9
1,528,158	-		CCNA_01410	0.36	-1.6
1,528,170	-		CCNA_01410	0.37	+0.4
1,528,237	+		CCNA_01410	0.41	-0.1
1,528,237	-		CCNA_01410	0.41	-1.4
1,528,245	-		CCNA_01410	0.42	+0.2
1,528,245	-		CCNA_01410	0.42	-0.4
1,528,272	+		CCNA_01410	0.44	+0.0
1,528,272	+		CCNA_01410	0.44	-1.1
1,528,273	+		CCNA_01410	0.44	+0.3
1,528,280	+		CCNA_01410	0.44	-1.9
1,528,307	-		CCNA_01410	0.46	-0.4
1,528,329	+		CCNA_01410	0.47	+0.2
1,528,334	+		CCNA_01410	0.48	-1.7
1,528,361	-		CCNA_01410	0.49	+0.1
1,528,379	+		CCNA_01410	0.51	-1.9
1,528,387	-		CCNA_01410	0.51	+1.7
1,528,393	+		CCNA_01410	0.52	-0.6
1,528,396	-		CCNA_01410	0.52	+0.9
1,528,412	+		CCNA_01410	0.53	+0.1
1,528,412	+		CCNA_01410	0.53	+1.7
1,528,412	+		CCNA_01410	0.53	+0.4
1,528,412	+		CCNA_01410	0.53	+0.4
1,528,412	+		CCNA_01410	0.53	+0.1
1,528,412	+		CCNA_01410	0.53	+0.1
1,528,412	+		CCNA_01410	0.53	-1.1
1,528,420	-		CCNA_01410	0.53	+0.1
1,528,420	-		CCNA_01410	0.53	-1.6
1,528,420	-		CCNA_01410	0.53	-0.3
1,528,420	-		CCNA_01410	0.53	-0.7
1,528,420	-		CCNA_01410	0.53	-0.7
1,528,420	-		CCNA_01410	0.53	+1.7
1,528,420	-		CCNA_01410	0.53	-1.6
1,528,420	-		CCNA_01410	0.53	-1.4
1,528,472	+		CCNA_01410	0.57	+0.7
1,528,512	+		CCNA_01410	0.60	-1.4
1,528,527	+		CCNA_01410	0.61	+1.7
1,528,535	-		CCNA_01410	0.61	-0.7
1,528,558	-		CCNA_01410	0.63	+0.1
1,528,590	-		CCNA_01410	0.65	+0.7
1,528,591	-		CCNA_01410	0.65	+0.4
1,528,593	+		CCNA_01410	0.65	-1.3
1,528,670	-		CCNA_01410	0.70	+0.4
1,528,671	-		CCNA_01410	0.70	-2.1
1,528,696	+		CCNA_01410	0.72	-0.6
1,528,704	-		CCNA_01410	0.72	-1.2
1,528,704	-		CCNA_01410	0.72	-1.3
1,528,706	-		CCNA_01410	0.72	-1.5
1,528,715	-		CCNA_01410	0.73	-0.4
1,528,720	+		CCNA_01410	0.73	+0.7
1,528,730	+		CCNA_01410	0.74	-0.3
1,528,730	+		CCNA_01410	0.74	+0.9
1,528,730	+		CCNA_01410	0.74	-1.3
1,528,730	+		CCNA_01410	0.74	-0.7
1,528,730	+		CCNA_01410	0.74	+1.1
1,528,730	+		CCNA_01410	0.74	-0.1
1,528,730	+		CCNA_01410	0.74	+0.6
1,528,730	+		CCNA_01410	0.74	+0.4
1,528,730	+		CCNA_01410	0.74	-1.4
1,528,738	-		CCNA_01410	0.75	-0.9
1,528,738	-		CCNA_01410	0.75	-0.1
1,528,738	-		CCNA_01410	0.75	-1.4
1,528,738	-		CCNA_01410	0.75	+0.1
1,528,746	+		CCNA_01410	0.75	+0.4
1,528,771	-		CCNA_01410	0.77	+1.1
1,528,895	+		CCNA_01410	0.85	+0.7
1,528,902	-		CCNA_01410	0.86	-0.5
1,528,902	-		CCNA_01410	0.86	-1.3
1,528,903	-				+2.1
1,528,903	-		CCNA_01410	0.86	-0.9
1,528,903	-		CCNA_01410	0.86	-1.1
1,528,903	-		CCNA_01410	0.86	+1.1
1,528,938	-		CCNA_01410	0.88	+1.2
1,528,938	-		CCNA_01410	0.88	-1.2
1,528,971	+				+2.7
1,528,979	-				-0.8
1,528,984	-				-1.0
1,529,010	+				-0.4
1,529,070	-				+1.1
1,529,121	-				+0.1
1,529,165	+				+0.7
1,529,165	+				+0.7
1,529,173	-				+2.2
1,529,173	-				+1.1
1,529,173	-				+2.2
1,529,205	-				+0.6
1,529,225	+				+0.4
1,529,271	+				+0.4
1,529,271	+				-0.7
1,529,279	-				+1.3
1,529,289	+				-0.1
1,529,297	-				+0.7
1,529,297	-				+0.7
1,529,299	+		CCNA_03949	0.10	+0.7
1,529,299	+		CCNA_03949	0.10	-0.1
1,529,307	-		CCNA_03949	0.12	+0.8
1,529,380	-		CCNA_03949	0.28	+3.7
1,529,410	-		CCNA_03949	0.34	+1.7
1,529,421	+		CCNA_03949	0.37	+0.4
1,529,429	-		CCNA_03949	0.38	+1.5
1,529,439	+		CCNA_03949	0.41	+0.2
1,529,442	-		CCNA_03949	0.41	+1.4
1,529,468	-		CCNA_03949	0.47	+2.4
1,529,468	-		CCNA_03949	0.47	+1.0
1,529,515	+		CCNA_03949	0.57	+1.7
1,529,517	-		CCNA_03949	0.58	+0.0
1,529,523	-		CCNA_03949	0.59	+0.4
1,529,534	-		CCNA_03949	0.61	+1.3
1,529,534	-		CCNA_03949	0.61	+1.4
1,529,534	-		CCNA_03949	0.61	+1.7
1,529,606	+		CCNA_03949	0.77	+1.2
1,529,606	+		CCNA_03949	0.77	+0.2
1,529,606	+		CCNA_03949	0.77	-1.2
1,529,608	+		CCNA_03949	0.77	+0.4
1,529,608	+		CCNA_03949	0.77	+0.7
1,529,614	-		CCNA_03949	0.79	+1.5
1,529,614	-		CCNA_03949	0.79	+2.6
1,529,616	-		CCNA_03949	0.79	+2.1
1,529,616	-		CCNA_03949	0.79	+1.7
1,529,659	+		CCNA_03949	0.88	+0.7
1,529,659	+		CCNA_03949	0.88	-1.1
1,529,667	-				-0.5
1,529,667	-				-0.4
1,529,667	-				+0.4
1,529,671	-				+2.1
1,529,684	-				+0.9
1,529,695	+				-1.3
1,529,727	+				-1.0
1,529,728	-				+0.3
1,529,756	-				-0.4
1,529,756	-				+0.3
1,529,783	-				+3.2
1,529,783	-				+3.4
1,529,783	-				+3.4
1,529,784	+				-1.5
1,529,786	+				-0.3
1,529,930	-				-1.3
1,529,948	+				+0.4
1,529,953	+				+0.9
1,529,953	+				-0.3
1,529,958	+				-0.8
1,530,014	+				+0.2
1,530,052	-				+0.7
1,530,088	+				+0.3
1,530,114	+		CCNA_01412	0.12	+1.1