Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01399

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,517,902	-				+1.8
1,517,902	-				-1.9
1,517,913	+		CCNA_01398	0.11	+0.1
1,517,957	+		CCNA_01398	0.18	+0.4
1,517,979	+		CCNA_01398	0.22	-2.2
1,517,979	+		CCNA_01398	0.22	-3.7
1,517,987	-		CCNA_01398	0.23	+2.8
1,517,987	-		CCNA_01398	0.23	+0.8
1,518,043	+		CCNA_01398	0.32	-1.1
1,518,048	+		CCNA_01398	0.33	-0.1
1,518,110	+		CCNA_01398	0.42	-0.4
1,518,125	+		CCNA_01398	0.45	+0.7
1,518,125	+		CCNA_01398	0.45	+0.5
1,518,132	-		CCNA_01398	0.46	-0.6
1,518,134	+		CCNA_01398	0.46	+1.2
1,518,146	+		CCNA_01398	0.48	-2.3
1,518,154	-		CCNA_01398	0.49	-0.2
1,518,220	-		CCNA_01398	0.59	-0.7
1,518,226	-		CCNA_01398	0.60	-0.2
1,518,319	+		CCNA_01398	0.75	-1.8
1,518,322	-		CCNA_01398	0.75	+0.2
1,518,380	+		CCNA_01398	0.85	-1.8
1,518,408	-		CCNA_01398	0.89	-0.9
1,518,427	+				+0.5
1,518,472	+				-0.5
1,518,472	+				-0.4
1,518,480	-				-2.2
1,518,480	-				+1.2
1,518,480	-				-1.6
1,518,491	+				-0.3
1,518,499	-				+1.2
1,518,535	+				+1.2
1,518,536	-				-0.9
1,518,547	+				+0.2
1,518,570	-				+0.5
1,518,582	+				-1.2
1,518,590	-				+0.5
1,518,590	-				+0.2
1,518,666	-				+0.2
1,518,704	+				+1.8
1,518,712	-		CCNA_01399	0.10	-2.0
1,518,712	-		CCNA_01399	0.10	-1.9
1,518,731	-		CCNA_01399	0.11	+1.0
1,518,739	-		CCNA_01399	0.12	-0.5
1,518,739	-		CCNA_01399	0.12	-1.2
1,518,842	-		CCNA_01399	0.19	-0.6
1,518,885	+		CCNA_01399	0.21	-0.4
1,518,893	-		CCNA_01399	0.22	+1.4
1,518,924	-		CCNA_01399	0.24	-1.3
1,518,924	-		CCNA_01399	0.24	-1.1
1,518,946	-		CCNA_01399	0.25	-1.2
1,518,979	+		CCNA_01399	0.28	+1.2
1,519,042	-		CCNA_01399	0.32	-2.1
1,519,093	+		CCNA_01399	0.35	-0.6
1,519,101	-		CCNA_01399	0.36	-0.3
1,519,123	+		CCNA_01399	0.37	+0.7
1,519,182	+		CCNA_01399	0.41	+1.2
1,519,201	+		CCNA_01399	0.42	+1.7
1,519,204	-		CCNA_01399	0.42	-0.8
1,519,206	+		CCNA_01399	0.42	+1.7
1,519,209	-		CCNA_01399	0.43	-1.1
1,519,214	-		CCNA_01399	0.43	+0.7
1,519,219	-		CCNA_01399	0.43	-0.8
1,519,222	+		CCNA_01399	0.43	-0.1
1,519,229	-		CCNA_01399	0.44	-0.3
1,519,229	-		CCNA_01399	0.44	+1.2
1,519,235	-		CCNA_01399	0.44	-1.0
1,519,244	-		CCNA_01399	0.45	-1.3
1,519,246	+		CCNA_01399	0.45	-0.4
1,519,265	+		CCNA_01399	0.46	+1.7
1,519,310	-		CCNA_01399	0.49	-2.2
1,519,313	+		CCNA_01399	0.49	+2.7
1,519,313	+				+1.7
1,519,321	+		CCNA_01399	0.50	+0.7
1,519,323	+		CCNA_01399	0.50	-1.7
1,519,326	+		CCNA_01399	0.50	+2.7
1,519,329	-		CCNA_01399	0.50	-0.3
1,519,361	+		CCNA_01399	0.53	-0.1
1,519,361	+		CCNA_01399	0.53	-0.3
1,519,366	+		CCNA_01399	0.53	-0.4
1,519,369	-		CCNA_01399	0.53	-1.1
1,519,369	-		CCNA_01399	0.53	-0.6
1,519,379	-		CCNA_01399	0.54	+0.2
1,519,434	-		CCNA_01399	0.57	+0.2
1,519,434	-		CCNA_01399	0.57	-0.4
1,519,589	-		CCNA_01399	0.67	+0.4
1,519,609	+		CCNA_01399	0.69	+0.4
1,519,638	-		CCNA_01399	0.71	+2.7
1,519,654	+		CCNA_01399	0.72	-1.0
1,519,654	+		CCNA_01399	0.72	+2.7
1,519,654	+		CCNA_01399	0.72	-0.7
1,519,662	-		CCNA_01399	0.72	+1.7
1,519,662	-		CCNA_01399	0.72	+1.7
1,519,690	-		CCNA_01399	0.74	+1.7
1,519,759	-		CCNA_01399	0.78	-0.4
1,519,792	+		CCNA_01399	0.81	+1.4
1,519,800	-		CCNA_01399	0.81	-1.7
1,519,802	+		CCNA_01399	0.81	+0.2
1,519,802	+		CCNA_01399	0.81	+0.5
1,519,802	+		CCNA_01399	0.81	-1.3
1,519,802	+		CCNA_01399	0.81	-1.5
1,519,802	+				+1.7
1,519,802	+		CCNA_01399	0.81	-0.6
1,519,802	+		CCNA_01399	0.81	-0.6
1,519,810	-		CCNA_01399	0.82	+0.7
1,519,810	-		CCNA_01399	0.82	+0.2
1,519,810	-		CCNA_01399	0.82	-1.1
1,519,810	-		CCNA_01399	0.82	-0.8
1,519,810	-		CCNA_01399	0.82	-0.9
1,519,810	-		CCNA_01399	0.82	-1.6
1,519,810	-		CCNA_01399	0.82	+0.2
1,519,810	-		CCNA_01399	0.82	-0.3
1,519,810	-		CCNA_01399	0.82	-2.2
1,519,810	-		CCNA_01399	0.82	-3.0
1,519,810	-		CCNA_01399	0.82	-0.3
1,519,810	-		CCNA_01399	0.82	-1.0
1,519,810	-		CCNA_01399	0.82	+0.4
1,519,812	+		CCNA_01399	0.82	-0.4
1,519,827	+		CCNA_01399	0.83	-0.6
1,519,828	+		CCNA_01399	0.83	-1.6
1,519,834	-		CCNA_01399	0.83	-0.8
1,519,843	+		CCNA_01399	0.84	+1.4
1,520,000	+				-0.2
1,520,020	+				+0.7
1,520,184	-		CCNA_01400	0.20	+1.7
1,520,196	+		CCNA_01400	0.24	-1.0
1,520,245	+		CCNA_01400	0.38	+1.5
1,520,266	+		CCNA_01400	0.45	+0.2
1,520,290	+		CCNA_01400	0.52	+0.2
1,520,298	-		CCNA_01400	0.54	+0.2
1,520,366	+		CCNA_01400	0.74	-1.8
1,520,375	-		CCNA_01400	0.77	+1.2
1,520,391	+		CCNA_01400	0.81	-1.1
1,520,433	-				+0.7
1,520,433	-				-1.3
1,520,456	+				+1.7
1,520,482	+				-0.1
1,520,482	+				-0.1
1,520,629	-				+0.4
1,520,743	-				-0.1
1,520,744	-				-1.2
1,520,782	-				-0.1
1,520,782	-				+0.4
1,520,793	+				-0.6
1,520,814	+				+2.7