Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01391

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,508,073	-		CCNA_01390	0.42	-0.6
1,508,093	-		CCNA_01390	0.44	+0.9
1,508,112	+		CCNA_01390	0.45	+3.6
1,508,113	+		CCNA_01390	0.45	+2.2
1,508,168	-		CCNA_01390	0.48	-0.4
1,508,169	-		CCNA_01390	0.48	-0.7
1,508,195	-		CCNA_01390	0.50	-0.9
1,508,201	+		CCNA_01390	0.50	+1.8
1,508,209	-		CCNA_01390	0.51	-2.0
1,508,287	-		CCNA_01390	0.56	+1.8
1,508,289	+		CCNA_01390	0.56	+1.8
1,508,336	+		CCNA_01390	0.59	-1.6
1,508,349	-		CCNA_01390	0.59	-1.3
1,508,377	-		CCNA_01390	0.61	-1.5
1,508,386	-		CCNA_01390	0.62	+0.8
1,508,435	+		CCNA_01390	0.65	-1.0
1,508,443	-		CCNA_01390	0.65	-0.6
1,508,443	-		CCNA_01390	0.65	-1.5
1,508,582	+		CCNA_01390	0.74	+1.2
1,508,582	+				+2.8
1,508,583	+		CCNA_01390	0.74	-0.2
1,508,591	-		CCNA_01390	0.74	-1.3
1,508,617	-		CCNA_01390	0.76	+0.9
1,508,620	+		CCNA_01390	0.76	+0.4
1,508,658	+		CCNA_01390	0.79	+1.1
1,508,666	-		CCNA_01390	0.79	-2.1
1,508,719	-		CCNA_01390	0.82	-0.9
1,508,719	-		CCNA_01390	0.82	-1.1
1,508,729	-		CCNA_01390	0.83	-0.1
1,508,749	+		CCNA_01390	0.84	-1.2
1,508,754	+		CCNA_01390	0.85	-2.0
1,508,754	+		CCNA_01390	0.85	+1.2
1,508,757	-		CCNA_01390	0.85	-1.9
1,508,767	-		CCNA_01390	0.85	+1.7
1,508,783	+		CCNA_01390	0.86	-0.5
1,508,783	+		CCNA_01390	0.86	+2.2
1,508,792	-		CCNA_01390	0.87	-0.7
1,508,853	-				+2.8
1,508,887	-				-1.2
1,508,904	-				-2.2
1,508,906	-				-0.6
1,508,913	+				+1.8
1,508,914	-				-0.4
1,508,921	-				+0.8
1,508,921	-				-0.2
1,508,921	-				+0.4
1,508,921	-				-0.4
1,508,934	-				+1.4
1,508,939	-				-1.1
1,508,963	+				+1.8
1,509,057	+				-0.5
1,509,069	+				+0.2
1,509,069	+				-1.7
1,509,069	+				-0.2
1,509,147	+				-2.0
1,509,216	+		CCNA_01391	0.14	-0.7
1,509,224	-		CCNA_01391	0.14	+0.2
1,509,233	-		CCNA_01391	0.15	-0.4
1,509,262	-		CCNA_01391	0.18	-0.1
1,509,296	+		CCNA_01391	0.21	-1.0
1,509,297	+		CCNA_01391	0.21	-1.6
1,509,304	-		CCNA_01391	0.22	+0.2
1,509,309	-		CCNA_01391	0.22	+1.2
1,509,334	+		CCNA_01391	0.25	+0.0
1,509,351	-		CCNA_01391	0.26	-1.7
1,509,362	-		CCNA_01391	0.27	-1.6
1,509,383	-		CCNA_01391	0.29	-1.1
1,509,385	-		CCNA_01391	0.29	-0.1
1,509,390	-		CCNA_01391	0.30	-2.5
1,509,426	+		CCNA_01391	0.33	+0.2
1,509,434	-		CCNA_01391	0.34	-1.7
1,509,434	-		CCNA_01391	0.34	+0.3
1,509,434	-		CCNA_01391	0.34	+0.4
1,509,540	-		CCNA_01391	0.44	-1.5
1,509,560	-		CCNA_01391	0.46	-0.1
1,509,590	+		CCNA_01391	0.48	-0.7
1,509,592	-		CCNA_01391	0.48	-0.1
1,509,660	-		CCNA_01391	0.55	+0.9
1,509,660	-		CCNA_01391	0.55	-1.2
1,509,677	+		CCNA_01391	0.56	-1.7
1,509,677	+		CCNA_01391	0.56	-0.7
1,509,685	-		CCNA_01391	0.57	-2.1
1,509,685	-		CCNA_01391	0.57	-2.2
1,509,685	-		CCNA_01391	0.57	+2.8
1,509,694	+		CCNA_01391	0.58	-0.1
1,509,728	+		CCNA_01391	0.61	-1.4
1,509,728	+		CCNA_01391	0.61	-0.4
1,509,779	-		CCNA_01391	0.66	-1.5
1,509,783	+		CCNA_01391	0.66	+2.8
1,509,784	-		CCNA_01391	0.66	-1.7
1,509,784	-		CCNA_01391	0.66	-0.5
1,509,808	+		CCNA_01391	0.68	-1.1
1,509,859	-		CCNA_01391	0.73	-0.8
1,509,888	-		CCNA_01391	0.76	+2.8
1,509,900	+		CCNA_01391	0.77	-1.2
1,509,908	-		CCNA_01391	0.78	-0.7
1,509,908	-		CCNA_01391	0.78	+1.3
1,509,934	+		CCNA_01391	0.80	-1.1
1,509,954	+		CCNA_01391	0.82	+1.8
1,509,982	+		CCNA_01391	0.84	-0.2
1,509,982	+		CCNA_01391	0.84	-0.7
1,509,982	+		CCNA_01391	0.84	-1.5
1,510,059	-				-0.9
1,510,063	+				-1.8
1,510,064	+				+1.2
1,510,064	+				-0.4
1,510,064	+				-0.1
1,510,071	-				-0.4
1,510,071	-				+0.2
1,510,074	+				-1.4
1,510,074	+				+1.4
1,510,074	+				+2.7
1,510,082	-				+0.8
1,510,092	-				+1.8
1,510,092	-				-1.1
1,510,092	-				-0.2
1,510,178	-				-0.2
1,510,178	-				+0.8
1,510,222	+				-1.2
1,510,267	+				-0.2
1,510,290	-				+0.8
1,510,302	+				+1.8
1,510,309	+				-1.6
1,510,310	-				-0.7
1,510,327	+				+0.6
1,510,327	+				+0.3
1,510,329	+				-1.0
1,510,362	+		CCNA_01392	0.12	-1.2
1,510,394	+		CCNA_01392	0.19	-0.3
1,510,394	+		CCNA_01392	0.19	-2.4
1,510,410	-		CCNA_01392	0.22	+0.8
1,510,446	+		CCNA_01392	0.30	+2.8
1,510,459	-		CCNA_01392	0.33	-1.3
1,510,506	-		CCNA_01392	0.43	-0.2
1,510,506	-		CCNA_01392	0.43	+0.2
1,510,554	+		CCNA_01392	0.53	+0.4
1,510,563	-		CCNA_01392	0.55	-0.6
1,510,565	+		CCNA_01392	0.56	+0.0
1,510,568	-		CCNA_01392	0.56	+0.3
1,510,622	+		CCNA_01392	0.68	+0.8
1,510,649	+		CCNA_01392	0.74	-1.2
1,510,744	-				-1.2
1,510,787	-				-1.2
1,510,809	-				+0.3
1,510,816	+				-0.6
1,510,826	+				+0.4
1,510,829	-				+1.9
1,510,834	-				+2.2
1,510,843	+				-0.2
1,510,868	+				+3.3
1,510,885	+				+0.1
1,510,893	-				+2.1
1,510,893	-				+2.8
1,510,893	-				+2.8
1,510,893	-				+4.7
1,510,906	+				-0.1
1,510,914	-				+2.8
1,510,921	+				-0.5
1,510,929	-				+2.8
1,510,929	-				+3.3
1,510,936	-				+2.2
1,511,004	-		CCNA_01393	0.12	+3.1
1,511,004	-		CCNA_01393	0.12	+3.4
1,511,034	-				+4.6
1,511,057	-		CCNA_01393	0.16	+3.0
1,511,057	-		CCNA_01393	0.16	+2.7
1,511,068	+		CCNA_01393	0.16	-0.2
1,511,078	-		CCNA_01393	0.17	+2.9
1,511,096	+		CCNA_01393	0.18	-0.6
1,511,105	-		CCNA_01393	0.19	+2.7
1,511,114	-		CCNA_01393	0.19	+3.1
1,511,114	-		CCNA_01393	0.19	+2.7
1,511,126	-		CCNA_01393	0.20	+3.6
1,511,147	-		CCNA_01393	0.21	+3.3
1,511,147	-		CCNA_01393	0.21	+3.0
1,511,147	-		CCNA_01393	0.21	+3.8