Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01301

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,425,478	+				-1.2
1,425,491	-				-1.0
1,425,509	+				-1.0
1,425,567	+				+2.1
1,425,611	-				-0.5
1,425,613	-				+0.8
1,425,630	+				-0.6
1,425,631	-				-1.4
1,425,726	+		CCNA_01300	0.11	+1.7
1,425,767	-		CCNA_01300	0.16	+0.4
1,425,769	+		CCNA_01300	0.16	+2.0
1,425,769	+		CCNA_01300	0.16	+1.4
1,425,769	+		CCNA_01300	0.16	+1.2
1,425,777	-		CCNA_01300	0.17	-0.8
1,425,791	+		CCNA_01300	0.18	+0.4
1,425,820	-		CCNA_01300	0.22	-0.2
1,425,820	-		CCNA_01300	0.22	-1.1
1,425,820	-		CCNA_01300	0.22	-1.9
1,425,854	-		CCNA_01300	0.26	-1.5
1,425,886	+		CCNA_01300	0.30	+1.8
1,425,886	+		CCNA_01300	0.30	-0.0
1,425,894	-		CCNA_01300	0.31	+0.2
1,425,914	+		CCNA_01300	0.33	+2.0
1,425,924	+		CCNA_01300	0.35	+2.1
1,425,932	-		CCNA_01300	0.36	-2.3
1,425,937	-		CCNA_01300	0.36	+1.1
1,425,957	+		CCNA_01300	0.39	+3.2
1,425,990	+		CCNA_01300	0.43	-0.9
1,425,998	-		CCNA_01300	0.44	+2.7
1,425,998	-		CCNA_01300	0.44	-0.8
1,426,036	+		CCNA_01300	0.48	+0.9
1,426,049	+		CCNA_01300	0.50	-0.5
1,426,082	-		CCNA_01300	0.54	-0.3
1,426,085	+		CCNA_01300	0.54	+1.3
1,426,090	+		CCNA_01300	0.55	-1.0
1,426,104	+		CCNA_01300	0.57	-1.8
1,426,112	-		CCNA_01300	0.58	+0.3
1,426,121	-		CCNA_01300	0.59	+0.4
1,426,126	+		CCNA_01300	0.59	+1.7
1,426,134	-		CCNA_01300	0.60	-1.2
1,426,147	+		CCNA_01300	0.62	+0.8
1,426,147	+		CCNA_01300	0.62	-0.9
1,426,155	-		CCNA_01300	0.63	-0.8
1,426,199	-		CCNA_01300	0.68	+2.3
1,426,212	+		CCNA_01300	0.70	-0.1
1,426,220	-		CCNA_01300	0.71	+2.1
1,426,230	-		CCNA_01300	0.72	+0.7
1,426,259	+		CCNA_01300	0.76	+0.5
1,426,336	+		CCNA_01300	0.85	+1.0
1,426,369	-		CCNA_01300	0.89	+1.1
1,426,374	-		CCNA_01300	0.90	+0.4
1,426,570	-				+3.8
1,426,664	-				-0.6
1,426,665	+				+1.7
1,426,760	-		CCNA_01301	0.13	-0.1
1,426,790	-		CCNA_01301	0.15	-1.2
1,426,809	+		CCNA_01301	0.15	-2.1
1,426,818	-		CCNA_01301	0.16	-0.1
1,426,818	-		CCNA_01301	0.16	-1.3
1,426,844	+		CCNA_01301	0.17	-0.5
1,426,844	+		CCNA_01301	0.17	+0.3
1,426,853	-		CCNA_01301	0.17	-2.5
1,426,868	+		CCNA_01301	0.18	-2.3
1,426,886	-		CCNA_01301	0.19	-0.3
1,426,895	-		CCNA_01301	0.19	+2.7
1,426,920	+		CCNA_01301	0.20	-0.2
1,426,947	+		CCNA_01301	0.21	-0.1
1,427,002	+		CCNA_01301	0.24	-0.1
1,427,010	-		CCNA_01301	0.24	-0.1
1,427,028	+		CCNA_01301	0.25	+0.8
1,427,042	-		CCNA_01301	0.26	+1.3
1,427,047	+		CCNA_01301	0.26	+0.1
1,427,057	+		CCNA_01301	0.26	-0.8
1,427,058	+		CCNA_01301	0.26	-1.9
1,427,065	-		CCNA_01301	0.27	-1.4
1,427,082	+		CCNA_01301	0.27	-0.2
1,427,118	-		CCNA_01301	0.29	+1.8
1,427,135	-		CCNA_01301	0.30	+0.7
1,427,157	-		CCNA_01301	0.31	-0.3
1,427,246	-		CCNA_01301	0.34	+0.1
1,427,283	+		CCNA_01301	0.36	+1.1
1,427,325	-		CCNA_01301	0.38	-0.1
1,427,327	+		CCNA_01301	0.38	-0.2
1,427,335	-		CCNA_01301	0.38	+1.7
1,427,339	+		CCNA_01301	0.38	+1.6
1,427,377	-		CCNA_01301	0.40	-0.1
1,427,390	+		CCNA_01301	0.41	-0.3
1,427,438	+		CCNA_01301	0.43	+0.7
1,427,438	+		CCNA_01301	0.43	+0.4
1,427,445	+		CCNA_01301	0.43	+1.7
1,427,445	+		CCNA_01301	0.43	+2.7
1,427,445	+		CCNA_01301	0.43	+1.1
1,427,453	-		CCNA_01301	0.43	+0.4
1,427,453	-		CCNA_01301	0.43	+0.4
1,427,453	-		CCNA_01301	0.43	-0.5
1,427,453	-		CCNA_01301	0.43	-1.2
1,427,453	-		CCNA_01301	0.43	+1.0
1,427,453	-		CCNA_01301	0.43	-1.0
1,427,458	-		CCNA_01301	0.44	-1.1
1,427,513	+		CCNA_01301	0.46	+0.8
1,427,533	-		CCNA_01301	0.47	-0.8
1,427,551	-		CCNA_01301	0.48	-1.2
1,427,564	-		CCNA_01301	0.48	+1.4
1,427,564	-		CCNA_01301	0.48	-0.3
1,427,564	-		CCNA_01301	0.48	-1.1
1,427,565	-		CCNA_01301	0.48	+0.1
1,427,578	+		CCNA_01301	0.49	+1.0
1,427,578	+		CCNA_01301	0.49	+0.8
1,427,579	+		CCNA_01301	0.49	+1.1
1,427,579	+		CCNA_01301	0.49	+0.7
1,427,587	-		CCNA_01301	0.49	+0.7
1,427,589	+		CCNA_01301	0.49	+0.1
1,427,597	-		CCNA_01301	0.50	-0.6
1,427,608	-		CCNA_01301	0.50	+0.4
1,427,629	-		CCNA_01301	0.51	-1.0
1,427,683	-		CCNA_01301	0.54	+0.1
1,427,732	-		CCNA_01301	0.56	-1.3
1,427,760	-		CCNA_01301	0.57	-0.6
1,427,776	+		CCNA_01301	0.58	-1.2
1,427,784	-		CCNA_01301	0.58	-2.1
1,427,784	-		CCNA_01301	0.58	-0.8
1,427,784	-		CCNA_01301	0.58	-0.5
1,427,784	-		CCNA_01301	0.58	-1.8
1,427,808	+		CCNA_01301	0.59	-0.4
1,427,813	+		CCNA_01301	0.59	+1.5
1,427,813	+		CCNA_01301	0.59	-0.3
1,427,813	+		CCNA_01301	0.59	-1.1
1,427,813	+		CCNA_01301	0.59	+4.4
1,427,813	+		CCNA_01301	0.59	+1.0
1,427,813	+		CCNA_01301	0.59	+0.8
1,427,813	+		CCNA_01301	0.59	-1.2
1,427,816	-		CCNA_01301	0.59	+0.1
1,427,816	-		CCNA_01301	0.59	+0.1
1,427,816	-		CCNA_01301	0.59	-0.3
1,427,820	+		CCNA_01301	0.60	-0.6
1,427,821	-		CCNA_01301	0.60	+0.7
1,427,826	-		CCNA_01301	0.60	-0.9
1,427,841	+		CCNA_01301	0.60	-0.3
1,427,915	+		CCNA_01301	0.64	+0.6
1,427,931	-		CCNA_01301	0.64	-0.4
1,427,998	-		CCNA_01301	0.67	+1.1
1,428,020	-		CCNA_01301	0.68	+1.7
1,428,022	+		CCNA_01301	0.68	+0.3
1,428,031	-		CCNA_01301	0.69	+1.1
1,428,054	+		CCNA_01301	0.70	+0.1
1,428,070	+		CCNA_01301	0.70	+1.5
1,428,070	+		CCNA_01301	0.70	-0.1
1,428,070	+		CCNA_01301	0.70	+1.0
1,428,078	-				+0.4
1,428,078	-		CCNA_01301	0.71	+0.1
1,428,128	+		CCNA_01301	0.73	-0.5
1,428,138	+		CCNA_01301	0.73	+0.1
1,428,138	+		CCNA_01301	0.73	-0.8
1,428,138	+		CCNA_01301	0.73	-0.3
1,428,146	-		CCNA_01301	0.74	+1.0
1,428,156	+		CCNA_01301	0.74	+0.8
1,428,171	+		CCNA_01301	0.75	+1.7
1,428,206	+		CCNA_01301	0.76	+0.4
1,428,222	+		CCNA_01301	0.77	+0.0
1,428,252	+		CCNA_01301	0.78	+1.2
1,428,331	-		CCNA_01301	0.82	-0.5
1,428,381	-		CCNA_01301	0.84	+1.1
1,428,389	+		CCNA_01301	0.84	+0.8
1,428,389	+		CCNA_01301	0.84	-1.3
1,428,389	+		CCNA_01301	0.84	-1.3
1,428,399	-		CCNA_01301	0.85	-1.5
1,428,404	-		CCNA_01301	0.85	+1.1
1,428,406	+		CCNA_01301	0.85	-0.6
1,428,406	+		CCNA_01301	0.85	+2.7
1,428,416	+		CCNA_01301	0.86	-0.9
1,428,416	+		CCNA_01301	0.86	+0.7
1,428,416	+		CCNA_01301	0.86	-1.6
1,428,424	-		CCNA_01301	0.86	+0.4
1,428,448	-		CCNA_01301	0.87	-0.6
1,428,485	+		CCNA_01301	0.89	-0.1
1,428,488	-		CCNA_01301	0.89	+1.1
1,428,493	-		CCNA_01301	0.89	-0.3
1,428,583	+				-2.1
1,428,637	-				-1.1
1,428,667	+				+3.3
1,428,703	-				-0.5
1,428,743	-				+0.1
1,428,762	+				-1.2
1,428,768	+				+0.7
1,428,770	-				+1.1
1,428,785	+				+2.1
1,428,789	-				-0.7
1,428,819	+				-1.1
1,428,842	+				-2.6
1,428,885	+				-1.2
1,428,888	-				-0.5
1,428,896	+				+3.2
1,428,896	+				-1.7
1,428,904	-				+0.4
1,429,120	-		CCNA_01302	0.28	-1.0
1,429,158	-		CCNA_01302	0.31	-1.2
1,429,264	+		CCNA_01302	0.40	-1.6
1,429,287	+		CCNA_01302	0.42	-1.5
1,429,299	+		CCNA_01302	0.43	+1.1
1,429,299	+		CCNA_01302	0.43	+0.8
1,429,307	+		CCNA_01302	0.44	-0.9
1,429,315	-		CCNA_01302	0.45	-0.5
1,429,315	-		CCNA_01302	0.45	+0.1
1,429,391	+		CCNA_01302	0.51	+1.5
1,429,440	-		CCNA_01302	0.56	+0.7
1,429,447	-		CCNA_01302	0.56	+0.4
1,429,458	-		CCNA_01302	0.57	+2.0
1,429,481	+		CCNA_01302	0.59	-1.2
1,429,493	+		CCNA_01302	0.60	-0.7
1,429,497	+		CCNA_01302	0.61	+0.8
1,429,498	+		CCNA_01302	0.61	+0.4
1,429,518	+		CCNA_01302	0.62	-1.3
1,429,542	+		CCNA_01302	0.65	-0.8
1,429,612	+		CCNA_01302	0.71	-1.5
1,429,617	+		CCNA_01302	0.71	+0.3
1,429,620	-		CCNA_01302	0.71	+2.7
1,429,626	-		CCNA_01302	0.72	+0.1
1,429,635	+		CCNA_01302	0.73	-0.9
1,429,640	+		CCNA_01302	0.73	+1.7
1,429,648	-		CCNA_01302	0.74	-1.4
1,429,648	-		CCNA_01302	0.74	-0.3
1,429,648	-		CCNA_01302	0.74	-1.3
1,429,678	+		CCNA_01302	0.76	-0.9
1,429,686	-		CCNA_01302	0.77	+1.1
1,429,720	-		CCNA_01302	0.80	-0.8
1,429,745	+		CCNA_01302	0.82	-0.8