Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01289

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,414,264	+		CCNA_01288	0.18	-0.2
1,414,272	-		CCNA_01288	0.18	-0.1
1,414,298	+		CCNA_01288	0.20	+0.4
1,414,301	-		CCNA_01288	0.21	-1.0
1,414,313	+		CCNA_01288	0.22	-0.5
1,414,313	+		CCNA_01288	0.22	-0.4
1,414,321	-		CCNA_01288	0.22	-0.1
1,414,360	-		CCNA_01288	0.25	-1.1
1,414,452	-		CCNA_01288	0.33	-2.3
1,414,549	+		CCNA_01288	0.41	+2.1
1,414,559	+		CCNA_01288	0.42	-1.1
1,414,559	+		CCNA_01288	0.42	-0.7
1,414,559	+		CCNA_01288	0.42	+1.1
1,414,559	+		CCNA_01288	0.42	-0.1
1,414,559	+		CCNA_01288	0.42	+0.2
1,414,567	-		CCNA_01288	0.42	+0.9
1,414,567	-		CCNA_01288	0.42	+0.1
1,414,567	-		CCNA_01288	0.42	-0.1
1,414,567	-		CCNA_01288	0.42	-0.0
1,414,592	-		CCNA_01288	0.44	+0.1
1,414,608	-		CCNA_01288	0.46	-0.7
1,414,610	-		CCNA_01288	0.46	+0.4
1,414,614	-		CCNA_01288	0.46	+1.1
1,414,673	+		CCNA_01288	0.51	+2.7
1,414,681	-		CCNA_01288	0.52	+0.5
1,414,681	-		CCNA_01288	0.52	-1.5
1,414,686	-		CCNA_01288	0.52	-0.8
1,414,688	+		CCNA_01288	0.52	+1.7
1,414,696	-		CCNA_01288	0.53	-0.9
1,414,696	-		CCNA_01288	0.53	+0.7
1,414,696	-		CCNA_01288	0.53	+2.1
1,414,696	-		CCNA_01288	0.53	-1.3
1,414,709	+		CCNA_01288	0.54	-1.4
1,414,710	+		CCNA_01288	0.54	+0.1
1,414,719	-		CCNA_01288	0.55	-0.4
1,414,741	-		CCNA_01288	0.57	-2.4
1,414,768	+		CCNA_01288	0.59	+0.9
1,414,776	-		CCNA_01288	0.60	+1.7
1,414,786	-		CCNA_01288	0.60	+0.4
1,414,794	+		CCNA_01288	0.61	-0.5
1,414,797	-		CCNA_01288	0.61	+0.7
1,414,835	-		CCNA_01288	0.64	+0.5
1,414,857	+		CCNA_01288	0.66	+0.5
1,414,902	+		CCNA_01288	0.70	+0.4
1,414,910	-		CCNA_01288	0.71	-0.6
1,415,042	-		CCNA_01288	0.81	-0.9
1,415,089	+		CCNA_01288	0.85	+0.3
1,415,090	-		CCNA_01288	0.85	+1.7
1,415,097	+		CCNA_01288	0.86	+0.2
1,415,149	-				+1.1
1,415,151	+				-0.8
1,415,167	+				+1.3
1,415,209	+				-0.6
1,415,273	+				-1.8
1,415,290	-				-0.6
1,415,310	+		CCNA_01289	0.14	+0.7
1,415,322	+		CCNA_01289	0.17	-0.4
1,415,373	+		CCNA_01289	0.30	-0.5
1,415,438	-		CCNA_01289	0.48	-2.2
1,415,448	+		CCNA_01289	0.50	-0.8
1,415,448	+		CCNA_01289	0.50	-1.3
1,415,448	+		CCNA_01289	0.50	+2.7
1,415,448	+		CCNA_01289	0.50	-0.1
1,415,448	+		CCNA_01289	0.50	+2.7
1,415,448	+		CCNA_01289	0.50	-0.8
1,415,448	+		CCNA_01289	0.50	+0.7
1,415,450	-		CCNA_01289	0.51	+0.7
1,415,456	-		CCNA_01289	0.52	-0.1
1,415,458	+		CCNA_01289	0.53	+0.4
1,415,466	-		CCNA_01289	0.55	+0.4
1,415,493	+		CCNA_01289	0.62	+0.1
1,415,501	-		CCNA_01289	0.64	-0.1
1,415,519	-		CCNA_01289	0.69	-0.1
1,415,519	-		CCNA_01289	0.69	-2.2
1,415,519	-		CCNA_01289	0.69	-0.5
1,415,587	-		CCNA_01289	0.87	-0.8
1,415,597	+		CCNA_01289	0.90	+0.4
1,415,605	-				+0.5
1,415,605	-				+3.3
1,415,615	-				-1.8
1,415,620	-				+2.8
1,415,620	-				+3.1
1,415,620	-				+3.1
1,415,620	-				+2.7
1,415,638	+				-0.8
1,415,638	+				-0.6
1,415,646	-				-0.3
1,415,684	-				+1.7
1,415,684	-				-0.9
1,415,692	-				+2.7
1,415,748	+				+0.4
1,415,748	+				-1.0
1,415,753	+				-0.6
1,415,753	+				+0.4
1,415,822	-				-1.2
1,415,918	-		CCNA_01290	0.16	+1.7
1,415,918	-		CCNA_01290	0.16	-0.6
1,415,928	+		CCNA_01290	0.17	-0.9
1,415,936	-		CCNA_01290	0.17	-0.1
1,415,936	-		CCNA_01290	0.17	-1.6
1,416,005	+		CCNA_01290	0.23	-0.1
1,416,010	+		CCNA_01290	0.24	-0.6
1,416,010	+		CCNA_01290	0.24	+0.9
1,416,013	-		CCNA_01290	0.24	+1.7
1,416,042	+		CCNA_01290	0.27	-1.0
1,416,052	+		CCNA_01290	0.28	+1.7
1,416,060	-		CCNA_01290	0.28	-0.8
1,416,073	+		CCNA_01290	0.30	+0.4
1,416,081	-		CCNA_01290	0.30	+1.1
1,416,081	-		CCNA_01290	0.30	+0.4
1,416,086	-		CCNA_01290	0.31	-0.3
1,416,091	-		CCNA_01290	0.31	-1.3
1,416,103	+		CCNA_01290	0.32	-0.1
1,416,111	+		CCNA_01290	0.33	+0.4
1,416,166	+		CCNA_01290	0.38	+2.7
1,416,200	+		CCNA_01290	0.41	-0.7
1,416,272	+		CCNA_01290	0.48	-0.8
1,416,272	+		CCNA_01290	0.48	-1.1
1,416,272	+		CCNA_01290	0.48	+0.7
1,416,274	+		CCNA_01290	0.48	-1.8
1,416,280	-		CCNA_01290	0.48	+0.5
1,416,280	-		CCNA_01290	0.48	-2.5
1,416,317	+		CCNA_01290	0.52	+1.2
1,416,427	+		CCNA_01290	0.62	-1.0
1,416,473	-		CCNA_01290	0.66	-0.5
1,416,519	+		CCNA_01290	0.70	+1.7
1,416,527	-		CCNA_01290	0.71	-0.6
1,416,532	-		CCNA_01290	0.71	-0.6
1,416,538	+		CCNA_01290	0.72	+1.1
1,416,546	-		CCNA_01290	0.72	-1.4
1,416,546	-		CCNA_01290	0.72	-1.2
1,416,546	-		CCNA_01290	0.72	+0.9
1,416,546	-		CCNA_01290	0.72	-2.0
1,416,600	+		CCNA_01290	0.77	+0.4
1,416,605	+		CCNA_01290	0.78	-2.2
1,416,605	+		CCNA_01290	0.78	-1.1
1,416,605	+		CCNA_01290	0.78	+0.4
1,416,605	+		CCNA_01290	0.78	-0.5
1,416,606	+		CCNA_01290	0.78	-1.6
1,416,606	+		CCNA_01290	0.78	+1.1
1,416,613	-		CCNA_01290	0.78	+0.7
1,416,614	-		CCNA_01290	0.79	-0.5
1,416,614	-		CCNA_01290	0.79	+0.7
1,416,629	-		CCNA_01290	0.80	-1.2
1,416,634	+		CCNA_01290	0.80	-0.3
1,416,634	+		CCNA_01290	0.80	+1.1
1,416,634	+		CCNA_01290	0.80	-1.5
1,416,634	+		CCNA_01290	0.80	-0.5
1,416,634	+		CCNA_01290	0.80	+0.1
1,416,634	+		CCNA_01290	0.80	-0.6
1,416,634	+		CCNA_01290	0.80	+0.1