Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01286

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,411,707	-		CCNA_01285	0.11	+1.1
1,411,707	-		CCNA_01285	0.11	-0.2
1,411,733	+		CCNA_01285	0.13	+0.1
1,411,733	+		CCNA_01285	0.13	-0.4
1,411,733	+		CCNA_01285	0.13	+0.6
1,411,741	-		CCNA_01285	0.14	+2.5
1,411,768	-		CCNA_01285	0.17	-0.4
1,411,768	-		CCNA_01285	0.17	-0.7
1,411,769	+		CCNA_01285	0.17	+1.6
1,411,783	-		CCNA_01285	0.18	+1.0
1,411,820	-		CCNA_01285	0.22	+1.1
1,411,845	+		CCNA_01285	0.25	+2.6
1,411,857	+		CCNA_01285	0.26	-0.7
1,411,875	-		CCNA_01285	0.28	-0.4
1,411,915	+		CCNA_01285	0.32	+0.3
1,411,915	+		CCNA_01285	0.32	+1.1
1,411,921	-		CCNA_01285	0.32	-0.9
1,411,923	-		CCNA_01285	0.33	-0.2
1,411,923	-		CCNA_01285	0.33	+0.3
1,411,989	-		CCNA_01285	0.39	+0.5
1,411,990	+		CCNA_01285	0.39	-0.7
1,412,049	-		CCNA_01285	0.45	+0.8
1,412,115	-		CCNA_01285	0.52	+1.6
1,412,115	-		CCNA_01285	0.52	+0.1
1,412,120	-		CCNA_01285	0.52	-1.4
1,412,144	-		CCNA_01285	0.55	-0.6
1,412,190	+		CCNA_01285	0.59	+0.2
1,412,190	+		CCNA_01285	0.59	+1.1
1,412,195	+		CCNA_01285	0.60	+1.1
1,412,198	-		CCNA_01285	0.60	+0.0
1,412,203	-		CCNA_01285	0.61	-0.6
1,412,220	-		CCNA_01285	0.63	+1.2
1,412,257	-		CCNA_01285	0.66	+0.8
1,412,257	-		CCNA_01285	0.66	-2.6
1,412,313	-		CCNA_01285	0.72	-1.1
1,412,324	-		CCNA_01285	0.73	-0.1
1,412,333	+		CCNA_01285	0.74	-0.2
1,412,382	+		CCNA_01285	0.79	-0.7
1,412,422	-		CCNA_01285	0.83	-0.8
1,412,431	+		CCNA_01285	0.84	+2.6
1,412,431	+		CCNA_01285	0.84	-0.5
1,412,448	-		CCNA_01285	0.86	+1.7
1,412,467	-		CCNA_01285	0.87	-0.1
1,412,501	+				+0.1
1,412,537	-				-0.8
1,412,591	+				-1.7
1,412,598	+				+1.1
1,412,601	-				+1.4
1,412,617	+				-1.1
1,412,625	-				+1.7
1,412,625	-				+2.1
1,412,649	-				-0.1
1,412,649	-				+0.7
1,412,671	-				-0.9
1,412,729	+		CCNA_01286	0.19	-1.1
1,412,729	+		CCNA_01286	0.19	+1.7
1,412,729	+		CCNA_01286	0.19	-1.2
1,412,737	-		CCNA_01286	0.22	+0.3
1,412,737	-		CCNA_01286	0.22	+0.2
1,412,737	-		CCNA_01286	0.22	-2.0
1,412,737	-		CCNA_01286	0.22	-1.1
1,412,777	+		CCNA_01286	0.38	+0.3
1,412,777	+		CCNA_01286	0.38	+1.5
1,412,785	-		CCNA_01286	0.41	+0.3
1,412,828	+		CCNA_01286	0.57	-0.5
1,412,828	+		CCNA_01286	0.57	+1.7
1,412,828	+		CCNA_01286	0.57	-0.8
1,412,828	+		CCNA_01286	0.57	-3.0
1,412,836	-		CCNA_01286	0.60	-1.7
1,412,836	-		CCNA_01286	0.60	-0.7
1,412,836	-		CCNA_01286	0.60	-0.1
1,412,836	-		CCNA_01286	0.60	-0.3
1,412,836	-		CCNA_01286	0.60	-0.5
1,412,836	-		CCNA_01286	0.60	+0.7
1,412,855	+		CCNA_01286	0.67	-0.0
1,412,868	+		CCNA_01286	0.72	-0.7
1,412,876	-		CCNA_01286	0.75	+1.1
1,412,915	+				-1.7
1,412,915	+				-0.8
1,412,923	-				-1.8
1,412,946	-				-0.7
1,412,958	+				+0.9
1,412,968	+				+0.4
1,412,968	+				+0.2
1,412,976	-				+1.1
1,412,976	-				+1.1
1,412,976	-				-0.1
1,412,981	+				+1.1
1,412,981	+				-0.1
1,412,989	-				-0.1
1,413,020	+				-0.8
1,413,033	-				-1.5
1,413,063	-		CCNA_01287	0.12	-0.3
1,413,088	+		CCNA_01287	0.15	+0.9
1,413,088	+		CCNA_01287	0.15	+0.7
1,413,096	-		CCNA_01287	0.16	-0.1
1,413,106	-		CCNA_01287	0.17	+0.1
1,413,156	+		CCNA_01287	0.22	-0.3
1,413,156	+		CCNA_01287	0.22	+0.3
1,413,156	+		CCNA_01287	0.22	+0.9
1,413,164	-		CCNA_01287	0.22	+0.7
1,413,208	+		CCNA_01287	0.27	+0.7
1,413,208	+		CCNA_01287	0.27	-1.4
1,413,293	+		CCNA_01287	0.35	+0.3
1,413,297	+		CCNA_01287	0.36	+1.1
1,413,306	-		CCNA_01287	0.37	-1.0
1,413,315	+		CCNA_01287	0.38	-0.8
1,413,324	-		CCNA_01287	0.39	-0.8
1,413,342	+		CCNA_01287	0.40	+0.7
1,413,365	+		CCNA_01287	0.43	-1.3
1,413,365	+		CCNA_01287	0.43	+2.7
1,413,415	-		CCNA_01287	0.48	+0.9
1,413,455	+		CCNA_01287	0.52	-1.7
1,413,455	+		CCNA_01287	0.52	-0.6
1,413,463	-		CCNA_01287	0.53	+1.1
1,413,470	+		CCNA_01287	0.53	+0.1
1,413,487	+		CCNA_01287	0.55	+2.7
1,413,544	-		CCNA_01287	0.61	-1.9
1,413,562	-		CCNA_01287	0.63	-0.3
1,413,658	-		CCNA_01287	0.72	+0.2
1,413,685	+		CCNA_01287	0.75	-1.5
1,413,714	+		CCNA_01287	0.78	+0.3
1,413,714	+		CCNA_01287	0.78	+1.7
1,413,722	-		CCNA_01287	0.79	-0.5
1,413,722	-		CCNA_01287	0.79	+1.7
1,413,727	-		CCNA_01287	0.79	+1.7
1,413,729	+		CCNA_01287	0.79	-0.5
1,413,729	+		CCNA_01287	0.79	+1.7
1,413,737	-		CCNA_01287	0.80	+0.3
1,413,746	-		CCNA_01287	0.81	+0.3
1,413,781	-		CCNA_01287	0.85	+0.4
1,413,802	+		CCNA_01287	0.87	+0.3
1,413,815	-		CCNA_01287	0.88	-1.7
1,413,815	-		CCNA_01287	0.88	-3.0
1,413,843	+				-0.5
1,413,889	+				+1.4
1,413,899	-				+0.3
1,413,911	-				+0.2
1,413,915	+				+0.3