Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01258

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,384,554	+				+0.3
1,384,555	-				+0.7
1,384,609	+				-0.1
1,384,634	+				+2.7
1,384,641	+				+0.3
1,384,719	-		CCNA_01257	0.17	-0.4
1,384,732	-		CCNA_01257	0.18	-0.7
1,384,751	-		CCNA_01257	0.20	-0.7
1,384,756	-		CCNA_01257	0.21	+0.3
1,384,772	-		CCNA_01257	0.23	-0.8
1,384,787	+		CCNA_01257	0.24	-0.5
1,384,795	-		CCNA_01257	0.25	-1.0
1,384,795	-		CCNA_01257	0.25	-0.1
1,384,838	+		CCNA_01257	0.29	-0.9
1,384,853	-		CCNA_01257	0.31	+1.1
1,385,078	-		CCNA_01257	0.55	-0.2
1,385,085	+		CCNA_01257	0.55	+1.3
1,385,095	+		CCNA_01257	0.56	-1.0
1,385,104	+		CCNA_01257	0.57	-3.4
1,385,105	+		CCNA_01257	0.57	-0.7
1,385,126	-		CCNA_01257	0.60	-1.7
1,385,126	-		CCNA_01257	0.60	+0.8
1,385,128	+		CCNA_01257	0.60	-0.1
1,385,138	+		CCNA_01257	0.61	-0.9
1,385,138	+		CCNA_01257	0.61	-0.1
1,385,146	-		CCNA_01257	0.62	+1.7
1,385,159	+		CCNA_01257	0.63	+0.7
1,385,225	-		CCNA_01257	0.70	+1.1
1,385,227	+		CCNA_01257	0.70	-1.2
1,385,233	+		CCNA_01257	0.71	+0.3
1,385,271	-		CCNA_01257	0.75	-1.1
1,385,320	+		CCNA_01257	0.80	-0.9
1,385,320	+		CCNA_01257	0.80	-0.1
1,385,327	+		CCNA_01257	0.81	-0.8
1,385,328	-		CCNA_01257	0.81	+0.7
1,385,330	-		CCNA_01257	0.81	-1.6
1,385,389	-		CCNA_01257	0.87	-0.8
1,385,398	-		CCNA_01257	0.88	-0.7
1,385,464	-				-0.8
1,385,559	+				-1.3
1,385,611	-		CCNA_01258	0.15	-1.0
1,385,641	+		CCNA_01258	0.20	-2.3
1,385,641	+		CCNA_01258	0.20	+1.1
1,385,646	+		CCNA_01258	0.21	-2.0
1,385,670	+		CCNA_01258	0.24	+0.3
1,385,692	+		CCNA_01258	0.28	-1.3
1,385,702	+		CCNA_01258	0.29	+1.1
1,385,741	+		CCNA_01258	0.35	-0.0
1,385,741	+		CCNA_01258	0.35	-1.5
1,385,750	+		CCNA_01258	0.36	-0.1
1,385,819	+		CCNA_01258	0.47	-0.1
1,385,819	+		CCNA_01258	0.47	-0.1
1,385,819	+		CCNA_01258	0.47	+1.7
1,385,827	-		CCNA_01258	0.48	-1.0
1,385,827	-		CCNA_01258	0.48	+1.1
1,385,847	+		CCNA_01258	0.51	-0.8
1,385,849	-		CCNA_01258	0.51	+1.1
1,385,855	-		CCNA_01258	0.52	-0.2
1,385,874	+		CCNA_01258	0.55	-0.9
1,385,882	-		CCNA_01258	0.56	+0.1
1,385,884	+		CCNA_01258	0.57	-0.1
1,385,920	+		CCNA_01258	0.62	+1.7
1,385,928	-		CCNA_01258	0.63	+1.7
1,385,928	-		CCNA_01258	0.63	-1.9
1,385,928	-		CCNA_01258	0.63	-0.7
1,385,928	-		CCNA_01258	0.63	-0.3
1,385,955	-		CCNA_01258	0.67	-1.6
1,386,019	+		CCNA_01258	0.77	+1.1
1,386,026	+		CCNA_01258	0.78	-0.1
1,386,027	-		CCNA_01258	0.78	-1.2
1,386,075	+		CCNA_01258	0.85	-1.5
1,386,113	+				+1.1
1,386,128	+				-1.5
1,386,136	-				+3.0
1,386,258	-				+1.7
1,386,278	+				-0.7
1,386,296	-				-1.1
1,386,309	+				-0.4
1,386,309	+				+0.9
1,386,309	+				+0.3
1,386,318	-				+0.3
1,386,330	-				+0.7
1,386,333	+				+0.6
1,386,343	+				+0.9
1,386,343	+				+0.5
1,386,375	-				-0.7
1,386,377	+				+0.7
1,386,425	+		CCNA_01259	0.13	+0.1
1,386,433	-		CCNA_01259	0.14	-0.3
1,386,435	+		CCNA_01259	0.14	+0.9
1,386,443	-		CCNA_01259	0.15	+0.7
1,386,460	+		CCNA_01259	0.17	-1.7
1,386,512	-		CCNA_01259	0.24	-0.1
1,386,529	+		CCNA_01259	0.26	-0.5
1,386,550	-		CCNA_01259	0.29	+0.7
1,386,553	+		CCNA_01259	0.29	-0.9
1,386,584	+		CCNA_01259	0.33	+0.3
1,386,619	+		CCNA_01259	0.38	+1.0
1,386,665	+		CCNA_01259	0.44	+0.4
1,386,673	-		CCNA_01259	0.45	+0.7
1,386,701	+		CCNA_01259	0.48	+0.2
1,386,815	+		CCNA_01259	0.63	+0.9
1,386,827	-		CCNA_01259	0.65	-0.7
1,386,899	+		CCNA_01259	0.74	+1.0
1,386,902	-		CCNA_01259	0.74	+0.7
1,386,999	-		CCNA_01259	0.87	+2.2
1,387,019	+		CCNA_01259	0.90	+1.4
1,387,042	+				+2.1
1,387,042	+				+1.8
1,387,065	+				+1.7
1,387,113	-				+1.7