Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01257

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,383,557	-				+1.1
1,383,562	+				+0.3
1,383,562	+				-1.3
1,383,595	-				+2.7
1,383,595	-				-0.4
1,383,602	-				+0.1
1,383,613	+				-1.2
1,383,640	-				-0.1
1,383,665	+		CCNA_01256	0.10	+0.9
1,383,681	+		CCNA_01256	0.12	+1.1
1,383,689	-		CCNA_01256	0.13	+1.7
1,383,746	+		CCNA_01256	0.18	-2.0
1,383,746	+		CCNA_01256	0.18	+0.7
1,383,746	+		CCNA_01256	0.18	-0.1
1,383,746	+		CCNA_01256	0.18	-0.7
1,383,754	-		CCNA_01256	0.19	+1.3
1,383,754	-		CCNA_01256	0.19	+1.3
1,383,754	-		CCNA_01256	0.19	+2.6
1,383,795	-		CCNA_01256	0.23	-0.1
1,383,802	+		CCNA_01256	0.24	+2.7
1,383,802	+		CCNA_01256	0.24	+0.3
1,383,807	+		CCNA_01256	0.24	-0.1
1,383,811	-		CCNA_01256	0.25	+0.1
1,383,858	+		CCNA_01256	0.30	-1.7
1,383,895	-		CCNA_01256	0.33	+2.7
1,383,912	-		CCNA_01256	0.35	+0.7
1,383,912	-		CCNA_01256	0.35	+1.3
1,383,912	-		CCNA_01256	0.35	+0.9
1,383,922	-		CCNA_01256	0.36	+0.3
1,383,952	-		CCNA_01256	0.39	-0.2
1,383,954	-				+2.7
1,383,976	+		CCNA_01256	0.41	+1.4
1,383,976	+		CCNA_01256	0.41	+1.1
1,383,976	+		CCNA_01256	0.41	-1.3
1,383,984	-		CCNA_01256	0.42	-0.7
1,383,984	-		CCNA_01256	0.42	+0.1
1,383,984	-		CCNA_01256	0.42	-1.9
1,384,048	+		CCNA_01256	0.49	+2.7
1,384,055	-		CCNA_01256	0.49	-1.3
1,384,069	+		CCNA_01256	0.51	+0.3
1,384,069	+		CCNA_01256	0.51	+1.1
1,384,071	+		CCNA_01256	0.51	+1.1
1,384,071	+		CCNA_01256	0.51	-1.7
1,384,077	-		CCNA_01256	0.52	-1.2
1,384,077	-		CCNA_01256	0.52	-2.1
1,384,079	-		CCNA_01256	0.52	+0.7
1,384,079	-		CCNA_01256	0.52	-1.7
1,384,079	-		CCNA_01256	0.52	-1.6
1,384,099	-		CCNA_01256	0.54	-1.2
1,384,140	+		CCNA_01256	0.58	-0.1
1,384,146	+		CCNA_01256	0.58	-0.7
1,384,154	-		CCNA_01256	0.59	-0.7
1,384,154	-		CCNA_01256	0.59	-0.1
1,384,161	+		CCNA_01256	0.60	+0.7
1,384,259	-		CCNA_01256	0.70	-1.8
1,384,285	+		CCNA_01256	0.72	-1.7
1,384,285	+		CCNA_01256	0.72	-1.2
1,384,285	+		CCNA_01256	0.72	+0.7
1,384,293	-		CCNA_01256	0.73	-0.3
1,384,293	-		CCNA_01256	0.73	+0.7
1,384,293	-		CCNA_01256	0.73	-1.7
1,384,303	-		CCNA_01256	0.74	-1.8
1,384,306	+		CCNA_01256	0.74	-0.2
1,384,314	-				+1.7
1,384,315	-		CCNA_01256	0.75	+0.3
1,384,349	-		CCNA_01256	0.79	+1.7
1,384,465	+				-0.9
1,384,484	-				+1.1
1,384,490	+				-0.5
1,384,500	+				+2.7
1,384,504	+				-0.3
1,384,554	+				+0.3
1,384,555	-				+0.7
1,384,609	+				-0.1
1,384,634	+				+2.7
1,384,641	+				+0.3
1,384,719	-		CCNA_01257	0.17	-0.4
1,384,732	-		CCNA_01257	0.18	-0.7
1,384,751	-		CCNA_01257	0.20	-0.7
1,384,756	-		CCNA_01257	0.21	+0.3
1,384,772	-		CCNA_01257	0.23	-0.8
1,384,787	+		CCNA_01257	0.24	-0.5
1,384,795	-		CCNA_01257	0.25	-1.0
1,384,795	-		CCNA_01257	0.25	-0.1
1,384,838	+		CCNA_01257	0.29	-0.9
1,384,853	-		CCNA_01257	0.31	+1.1
1,385,078	-		CCNA_01257	0.55	-0.2
1,385,085	+		CCNA_01257	0.55	+1.3
1,385,095	+		CCNA_01257	0.56	-1.0
1,385,104	+		CCNA_01257	0.57	-3.4
1,385,105	+		CCNA_01257	0.57	-0.7
1,385,126	-		CCNA_01257	0.60	-1.7
1,385,126	-		CCNA_01257	0.60	+0.8
1,385,128	+		CCNA_01257	0.60	-0.1
1,385,138	+		CCNA_01257	0.61	-0.9
1,385,138	+		CCNA_01257	0.61	-0.1
1,385,146	-		CCNA_01257	0.62	+1.7
1,385,159	+		CCNA_01257	0.63	+0.7
1,385,225	-		CCNA_01257	0.70	+1.1
1,385,227	+		CCNA_01257	0.70	-1.2
1,385,233	+		CCNA_01257	0.71	+0.3
1,385,271	-		CCNA_01257	0.75	-1.1
1,385,320	+		CCNA_01257	0.80	-0.9
1,385,320	+		CCNA_01257	0.80	-0.1
1,385,327	+		CCNA_01257	0.81	-0.8
1,385,328	-		CCNA_01257	0.81	+0.7
1,385,330	-		CCNA_01257	0.81	-1.6
1,385,389	-		CCNA_01257	0.87	-0.8
1,385,398	-		CCNA_01257	0.88	-0.7
1,385,464	-				-0.8
1,385,559	+				-1.3
1,385,611	-		CCNA_01258	0.15	-1.0
1,385,641	+		CCNA_01258	0.20	-2.3
1,385,641	+		CCNA_01258	0.20	+1.1
1,385,646	+		CCNA_01258	0.21	-2.0
1,385,670	+		CCNA_01258	0.24	+0.3
1,385,692	+		CCNA_01258	0.28	-1.3
1,385,702	+		CCNA_01258	0.29	+1.1
1,385,741	+		CCNA_01258	0.35	-0.0
1,385,741	+		CCNA_01258	0.35	-1.5
1,385,750	+		CCNA_01258	0.36	-0.1
1,385,819	+		CCNA_01258	0.47	-0.1
1,385,819	+		CCNA_01258	0.47	-0.1
1,385,819	+		CCNA_01258	0.47	+1.7
1,385,827	-		CCNA_01258	0.48	-1.0
1,385,827	-		CCNA_01258	0.48	+1.1
1,385,847	+		CCNA_01258	0.51	-0.8
1,385,849	-		CCNA_01258	0.51	+1.1
1,385,855	-		CCNA_01258	0.52	-0.2
1,385,874	+		CCNA_01258	0.55	-0.9
1,385,882	-		CCNA_01258	0.56	+0.1
1,385,884	+		CCNA_01258	0.57	-0.1
1,385,920	+		CCNA_01258	0.62	+1.7
1,385,928	-		CCNA_01258	0.63	+1.7
1,385,928	-		CCNA_01258	0.63	-1.9
1,385,928	-		CCNA_01258	0.63	-0.7
1,385,928	-		CCNA_01258	0.63	-0.3
1,385,955	-		CCNA_01258	0.67	-1.6
1,386,019	+		CCNA_01258	0.77	+1.1
1,386,026	+		CCNA_01258	0.78	-0.1
1,386,027	-		CCNA_01258	0.78	-1.2
1,386,075	+		CCNA_01258	0.85	-1.5
1,386,113	+				+1.1
1,386,128	+				-1.5
1,386,136	-				+3.0
1,386,258	-				+1.7
1,386,278	+				-0.7
1,386,296	-				-1.1
1,386,309	+				-0.4
1,386,309	+				+0.9
1,386,309	+				+0.3
1,386,318	-				+0.3
1,386,330	-				+0.7
1,386,333	+				+0.6
1,386,343	+				+0.9
1,386,343	+				+0.5
1,386,375	-				-0.7
1,386,377	+				+0.7
1,386,425	+		CCNA_01259	0.13	+0.1
1,386,433	-		CCNA_01259	0.14	-0.3
1,386,435	+		CCNA_01259	0.14	+0.9
1,386,443	-		CCNA_01259	0.15	+0.7
1,386,460	+		CCNA_01259	0.17	-1.7
1,386,512	-		CCNA_01259	0.24	-0.1