Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01207

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,332,735	+		CCNA_01205	0.77	+1.7
1,332,768	-		CCNA_01205	0.81	-1.3
1,332,775	-		CCNA_01205	0.81	+0.7
1,332,790	+		CCNA_01205	0.83	-0.5
1,332,805	-		CCNA_01205	0.84	-0.9
1,332,807	+		CCNA_01205	0.85	-0.3
1,332,814	-		CCNA_01205	0.85	-0.1
1,332,815	-		CCNA_01205	0.85	-0.1
1,332,824	-		CCNA_01205	0.86	+0.4
1,332,824	-		CCNA_01205	0.86	+3.3
1,332,869	-				-1.4
1,332,915	-				+0.4
1,332,960	-				+1.7
1,332,967	+				+1.1
1,332,967	+				+0.9
1,332,975	-				-0.3
1,332,975	-				+0.7
1,332,975	-				-1.4
1,332,975	-				+1.3
1,333,005	-				-1.3
1,333,009	-				-1.9
1,333,009	-				-0.9
1,333,023	+				+1.7
1,333,061	+		CCNA_01206	0.14	+0.4
1,333,061	+		CCNA_01206	0.14	+1.1
1,333,061	+		CCNA_01206	0.14	+0.1
1,333,069	-		CCNA_01206	0.15	-1.0
1,333,069	-		CCNA_01206	0.15	+0.7
1,333,078	+		CCNA_01206	0.16	+0.4
1,333,085	-		CCNA_01206	0.17	+1.1
1,333,086	-		CCNA_01206	0.17	-1.1
1,333,088	+		CCNA_01206	0.17	-0.9
1,333,187	-		CCNA_01206	0.31	-3.7
1,333,278	+		CCNA_01206	0.43	+0.1
1,333,312	-		CCNA_01206	0.48	-1.2
1,333,316	+		CCNA_01206	0.48	-0.6
1,333,336	+		CCNA_01206	0.51	-0.6
1,333,336	+		CCNA_01206	0.51	-2.2
1,333,336	+		CCNA_01206	0.51	-1.9
1,333,338	-		CCNA_01206	0.51	-1.2
1,333,349	-		CCNA_01206	0.53	+2.7
1,333,355	-		CCNA_01206	0.54	+0.1
1,333,362	+		CCNA_01206	0.54	+0.7
1,333,373	+		CCNA_01206	0.56	-0.8
1,333,393	+		CCNA_01206	0.59	+0.1
1,333,406	-		CCNA_01206	0.60	-1.0
1,333,408	+		CCNA_01206	0.61	+0.7
1,333,414	+		CCNA_01206	0.62	+2.1
1,333,427	-		CCNA_01206	0.63	+0.7
1,333,454	+		CCNA_01206	0.67	-2.5
1,333,474	+		CCNA_01206	0.70	-0.3
1,333,482	-		CCNA_01206	0.71	-0.3
1,333,482	-		CCNA_01206	0.71	+1.7
1,333,511	+		CCNA_01206	0.75	-0.5
1,333,511	+		CCNA_01206	0.75	-0.6
1,333,519	-		CCNA_01206	0.76	+1.7
1,333,523	-		CCNA_01206	0.76	+0.4
1,333,561	+		CCNA_01206	0.81	-0.9
1,333,569	-		CCNA_01206	0.83	+2.7
1,333,611	+		CCNA_01206	0.88	-0.1
1,333,658	+				-0.1
1,333,661	-				+0.4
1,333,661	-				-0.1
1,333,666	-				-0.1
1,333,668	+				+0.4
1,333,668	+				-0.3
1,333,692	-				+1.1
1,333,734	+				+1.1
1,333,735	+				+0.1
1,333,755	+				-0.3
1,333,786	-				-1.3
1,333,805	+				-0.5
1,333,819	-		CCNA_01207	0.11	-0.5
1,333,819	-		CCNA_01207	0.11	+0.4
1,333,831	-		CCNA_01207	0.12	-0.6
1,333,839	+		CCNA_01207	0.12	+0.4
1,333,847	-		CCNA_01207	0.13	-0.3
1,333,888	+		CCNA_01207	0.16	+0.4
1,333,913	-		CCNA_01207	0.19	+2.4
1,333,913	-		CCNA_01207	0.19	+0.1
1,333,913	-		CCNA_01207	0.19	-1.6
1,333,955	+		CCNA_01207	0.22	-1.6
1,333,960	+		CCNA_01207	0.23	+1.0
1,333,960	+		CCNA_01207	0.23	+1.1
1,333,968	-		CCNA_01207	0.23	+0.7
1,333,968	-		CCNA_01207	0.23	+1.7
1,333,974	-		CCNA_01207	0.24	-0.3
1,333,983	+		CCNA_01207	0.24	+1.1
1,333,988	+		CCNA_01207	0.25	+1.6
1,333,993	+		CCNA_01207	0.25	+2.6
1,334,011	-		CCNA_01207	0.27	+1.1
1,334,048	+		CCNA_01207	0.30	+2.0
1,334,056	-		CCNA_01207	0.31	-0.1
1,334,062	-		CCNA_01207	0.31	+0.1
1,334,071	+		CCNA_01207	0.32	+1.3
1,334,071	+		CCNA_01207	0.32	+2.5
1,334,139	+		CCNA_01207	0.38	-1.1
1,334,139	+		CCNA_01207	0.38	-1.6
1,334,139	+		CCNA_01207	0.38	+0.7
1,334,139	+		CCNA_01207	0.38	+0.1
1,334,147	-		CCNA_01207	0.38	-1.1
1,334,181	-		CCNA_01207	0.41	+1.7
1,334,234	-		CCNA_01207	0.46	+1.7
1,334,337	+		CCNA_01207	0.54	+1.1
1,334,351	-		CCNA_01207	0.56	+0.4
1,334,454	+		CCNA_01207	0.64	-0.2
1,334,454	+		CCNA_01207	0.64	-0.0
1,334,462	-		CCNA_01207	0.65	+1.7
1,334,509	+		CCNA_01207	0.69	+0.6
1,334,530	-		CCNA_01207	0.71	+0.7
1,334,559	+		CCNA_01207	0.73	-1.2
1,334,565	-		CCNA_01207	0.74	-0.1
1,334,583	+		CCNA_01207	0.75	+0.8
1,334,590	+		CCNA_01207	0.76	-0.1
1,334,613	-		CCNA_01207	0.78	+0.7
1,334,624	+		CCNA_01207	0.79	-0.6
1,334,641	-		CCNA_01207	0.80	+0.7
1,334,675	-				+1.1
1,334,750	+		CCNA_01207	0.89	-0.2
1,334,753	-		CCNA_01207	0.90	-1.0
1,334,758	-				-0.6
1,334,800	+				+1.6
1,334,800	-				+3.0
1,334,830	+				+2.3
1,334,843	-				+0.1
1,334,843	-				+0.1
1,334,869	+				-0.0
1,334,869	+				+0.7
1,334,869	+				+0.4
1,334,869	+				-1.0
1,334,869	+				-1.4
1,334,877	-				-1.1
1,334,877	-				-0.1
1,334,896	+				-0.5
1,334,896	+				-0.5
1,334,904	-				-0.6
1,334,956	-		CCNA_01208	0.14	+0.4
1,334,964	-		CCNA_01208	0.15	-0.6
1,334,986	+		CCNA_01208	0.19	-0.1
1,334,987	+		CCNA_01208	0.19	-0.6
1,334,987	+		CCNA_01208	0.19	+1.4
1,334,995	-		CCNA_01208	0.20	+1.7
1,335,000	-		CCNA_01208	0.21	-0.3
1,335,041	+		CCNA_01208	0.28	-0.3
1,335,041	+		CCNA_01208	0.28	-0.2
1,335,056	+		CCNA_01208	0.30	+1.5
1,335,064	-		CCNA_01208	0.32	-0.8
1,335,064	-		CCNA_01208	0.32	-0.3
1,335,081	-		CCNA_01208	0.34	+1.1
1,335,083	-		CCNA_01208	0.35	+0.7
1,335,098	+		CCNA_01208	0.37	+0.4
1,335,103	-		CCNA_01208	0.38	+1.1
1,335,126	-		CCNA_01208	0.42	+1.1
1,335,126	-		CCNA_01208	0.42	-1.0
1,335,235	-		CCNA_01208	0.60	-0.6
1,335,253	+		CCNA_01208	0.63	+0.4
1,335,258	+		CCNA_01208	0.64	+0.1
1,335,268	+		CCNA_01208	0.65	-0.3
1,335,275	-		CCNA_01208	0.67	-0.1
1,335,361	+		CCNA_01208	0.81	-0.1
1,335,361	+		CCNA_01208	0.81	-0.0
1,335,369	-		CCNA_01208	0.82	+2.7
1,335,375	+		CCNA_01208	0.83	+1.7
1,335,399	+		CCNA_01208	0.87	+0.1
1,335,409	+		CCNA_01208	0.89	-1.4
1,335,472	+				-1.6
1,335,528	+				+0.1
1,335,551	-				-1.8
1,335,580	-				+0.4
1,335,590	-				+1.4
1,335,642	+		CCNA_01209	0.13	-1.1
1,335,647	-		CCNA_01209	0.14	-1.1
1,335,650	+		CCNA_01209	0.14	+1.2
1,335,693	+				+0.7
1,335,696	-		CCNA_01209	0.18	-0.1
1,335,730	+		CCNA_01209	0.21	+1.1
1,335,777	+		CCNA_01209	0.25	+0.4
1,335,777	+		CCNA_01209	0.25	-0.6
1,335,777	+		CCNA_01209	0.25	+1.1
1,335,777	+		CCNA_01209	0.25	-0.6
1,335,777	+		CCNA_01209	0.25	-3.6
1,335,777	+		CCNA_01209	0.25	+0.7
1,335,777	+		CCNA_01209	0.25	-2.2
1,335,777	+		CCNA_01209	0.25	-1.8
1,335,785	-		CCNA_01209	0.26	-1.7
1,335,785	-		CCNA_01209	0.26	-1.5
1,335,785	-		CCNA_01209	0.26	-0.9
1,335,785	-				+2.7
1,335,785	-		CCNA_01209	0.26	+1.1
1,335,785	-		CCNA_01209	0.26	+1.1
1,335,785	-		CCNA_01209	0.26	-1.6
1,335,785	-		CCNA_01209	0.26	-1.6
1,335,785	-		CCNA_01209	0.26	-0.3
1,335,785	-		CCNA_01209	0.26	-2.1
1,335,785	-		CCNA_01209	0.26	-1.6
1,335,785	-		CCNA_01209	0.26	-1.1
1,335,801	+		CCNA_01209	0.27	-2.2
1,335,816	-		CCNA_01209	0.29	+0.1
1,335,839	-		CCNA_01209	0.31	-1.3
1,335,853	-		CCNA_01209	0.32	+0.7
1,335,855	+		CCNA_01209	0.32	-1.3